Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq15412 174 5e-41 >seq15412 Length=1236 Score = 174 bits (192), Expect = 5e-41 Identities = 270/382 (71%), Gaps = 29/382 (8%) Strand=Plus/Plus Query 188 AGAGTGGTATTTCAACAACGACTCCACAACC-ACTAGCGT---GGCCGCATCATAGTCTC 243 ||||||||||||||| || || |||| |||||||| || | | ||| | | Sbjct 18 AGAGTGGTATTTCAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAA--ATAAT-TA 74 Query 244 CCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGG 302 |||| ||| ||||||| | | || ||||| ||| | |||| ||||| | ||| Sbjct 75 CCACTTATGCTACACATATTAGATAATATAACAATATAAAGATGTAGTAAAGGTTCACGG 134 Query 303 GGTCTTTTCGTCCTGCCGC-GCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGG 361 ||||||| |||| | | ||| | ||||||| || || | ||| ||||| | | Sbjct 135 GGTCTTTCCGTCTAACTATAGAGAATCC-GCATCTTCACGGATAATTCAAATTCACTGAG 193 Query 362 CCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 421 || | | |||||||| ||| |||||||| |||||| ||||||||||||||||||||| Sbjct 194 TCTATATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGA 253 Query 422 CAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAA 481 ||||||||||||||||||||||| || | |||||| ||||||||||||||| |||| | Sbjct 254 CAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCA 313 Query 482 TTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGG 541 || | || || || |||| |||| |||||||||||||| Sbjct 314 TT-------------------TAATGCGCAAACATTTCCTTTTAATCTTCCAGCACCGGG 354 Query 542 CAGGCGTCAGTCCGTATACCTC 563 |||| ||||| || ||||| || Sbjct 355 CAGGTGTCAGACCCTATACATC 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701767813760