Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq34653 78.8 2e-12 >seq34653 Length=539 Score = 78.8 bits (86), Expect = 2e-12 Identities = 157/230 (68%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 67 TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTG 126 |||| ||| | || ||||| ||||||| | | |||||||| |||| | | Sbjct 61 TTTTCCTCCTTAATGAAAGAGCTTTACAACCTAATTAGCCTTCATCACTCACTCGGTATT 120 Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 |||| ||| || ||| ||||| |||| ||||| ||||||||||| | ||||| Sbjct 121 ACTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTT 179 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 || |||||||||||| ||||||||| || | | || ||| | | ||| || |||| Sbjct 180 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGG 239 Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACC-TAATGGAACGCATCCCCATC 295 || ||| | | ||| | || |||||| |||| ||||| | |||| Sbjct 240 CTTGGTAGTCTATTAAACTACCAACTACCATAATCTTACGCAAACTCATC 289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068403101120