Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq23512 277 3e-72 >seq23512 Length=787 Score = 277 bits (306), Expect = 3e-72 Identities = 235/283 (83%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 378 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 435 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 436 GCCGCGACGCTACCATCTGCCGGATTATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCG 495 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG--CTTCGGCCCCGA 178 ||||| || |||| || |||| ||||||| ||||||||||||| || |||| | Sbjct 496 GAACGCGGCGATTTCGCCCCGCACGTCGTAGTTGGATACGAATAGGCCCTCGGGCCATGC 555 Query 179 ACCTTAGCAGGCCGGCAACGGGCGTCCCGCGG---AAGCGCGGGGCGCTCAGCTGGCGGA 235 |||| ||||||| ||| |||| | |||| || || | | || ||| ||||||||| Sbjct 556 ACCTCAGCAGGCTGGCGACGGCC--CCCGGGGAGAAACCCCCGGAGGCT-GGCTGGCGGA 612 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| ||| ||||| |||| |||||| ||||| |||||||||| Sbjct 613 TTGTAATGTCACCTCGCGCGGGGATAGATCCTCTGCAGACGAC 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818905296640