Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq4411 354 2e-93 seq25497 176 1e-39 >seq4411 Length=21687 Score = 354 bits (392), Expect = 2e-93 Identities = 563/797 (71%), Gaps = 13/797 (2%) Strand=Plus/Minus Query 37652 ATGAAACAATATTTAGACTTGCTGCAAGACATCT--TAGAAAACGGCGTCGAAAAAGAAG 37709 |||||||| || ||||||| ||| | ||| | | ||| | ||| || ||| | Sbjct 3955 ATGAAACAGTACCTAGACTTCATGC--GCCATGTACTCGAACATGGCACAGACAAAACCG 3898 Query 37710 ACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAG 37769 |||| |||||| ||||||| |||||||||||| ||| | |||||| || | || | Sbjct 3897 ACCGCACGGGCACAGGCACGCGCTCGGTGTTCGGCTATCAGATGCGCTTCGACCTGCAGG 3838 Query 37770 ATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGC 37829 | || || |||||||| || ||||||||| |||| ||| || ||| | | ||||||| Sbjct 3837 AAGGGTTCCCGCTCGTCACCACGAAAAAAGTGCACATCAAATCGATCGTGCACGAACTGC 3778 Query 37830 TTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTT 37889 | ||||| | ||||| || ||||| |||||||||||||| || ||||| | || | Sbjct 3777 TGTGGTTCCTGCAAGGCAGCACCAACGTGCGCTATTTGCAGGAAAACGGCGTCTCCATCT 3718 Query 37890 GGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCT 37949 || | || |||||||| | | || || ||||| || | ||||||||||||||||||| Sbjct 3717 GGAACGAATGGGCGGATGCCGAAGGTGAACTCGGGCCCGTCTACGGCGCGCAATGGCGCT 3658 Query 37950 CGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGAT--CGCATGGGTTGTCGAAGAGAT 38007 ||||| | | || || |||||||||||| |||| | | || || |||| Sbjct 3657 CGTGGCCAACACCCGATGGCGGTCACATCGACCAGATTACGCA--GATCGTGGAGCAGAT 3600 Query 38008 -CAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGA-ATTG 38065 | ||| | ||| | || || || ||| | ||| ||| |||||||| | || ||| Sbjct 3599 CCGCTCGACA-CCGGACTCGCGTCGCCTGATCGTGTCCGCATGGAATGTCGGCGAGATTC 3541 Query 38066 GACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCGG 38125 || ||| |||||| ||||| ||| ||| |||||||| || ||| ||||| | Sbjct 3540 CGCG-TATGGCGCTGCCCCCGTGCCATGCGTTCTTCCAGTTCTACGTTGCCGACGGCAAG 3482 Query 38126 TTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATC 38185 ||||| ||| | | || || | || | || | ||| ||||||| |||||| Sbjct 3481 TTGTCCTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGTTCAACATC 3422 Query 38186 GCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAA 38245 || |||||||| |||||||||||||||| || || ||| || | ||||||| || || Sbjct 3421 GCCAGCTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGCCTGGATGTGGGCGAC 3362 Query 38246 CTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTG 38305 |||| | ||||| |||||| |||| ||||||| ||||| || ||||| | | || | Sbjct 3361 TTCATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAACAGGTGCAAACG 3302 Query 38306 CAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCCGCCGTCT 38365 ||||| |||||| |||| ||||||||||||||||| | | || ||||| || Sbjct 3301 CAGCTCGCGCGCGCGCCGTTCCCGCTGCCGAAGCTTGAGATCGCGCGCAAGCCCGATTCG 3242 Query 38366 ATCTTTGACTATGAATACGACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGATT 38425 ||||| || || | | ||| ||||| | ||| |||| ||||| ||||||| || | Sbjct 3241 ATCTTCGATTACAAGTTCGAGGACTTCCATATCATCGGATACGAAGCGCATCC-GCACAT 3183 Query 38426 AAAGCACCGGTGGCGGT 38442 |||| |||||||| || Sbjct 3182 CAAGCGCCGGTGGCCGT 3166 >seq25497 Length=733 Score = 176 bits (194), Expect = 1e-39 Identities = 363/535 (68%), Gaps = 4/535 (1%) Strand=Plus/Minus Query 37910 AACGGCGATCTCGGCCCGATTTACGGCGCGCAA-TGGCGCTCGTGGAAGGGAGCAGACGG 37968 |||||||| || |||||| | || || |||| | |||||| ||||| || || || Sbjct 729 AACGGCGACCTGGGCCCGGTGTATGG-GCGCCAGTGGCGCGCGTGGCCCACGGCCGATGG 671 Query 37969 GAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACG 38028 || | ||||||||||| ||||| || ||||||||||| || || ||| |||| || Sbjct 670 CAAGGTGGTGGACCAGATCGCCTGGGTGGTGGAAGAGATCAAGCGCAACCCGGATTCGCG 611 Query 38029 CCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTG 38088 ||| || | || ||| ||||| || | ||| || ||||| ||| |||||| Sbjct 610 CCGCCTTATCGTTTCCGCATGGAACGTGGGCGAACTGCCGAAGATGGCCCTGATGCCGTG 551 Query 38089 TCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCG 38148 || | || |||||||| || || ||||| | || ||| | | | ||||| Sbjct 550 CCACACCATGTTCCAGTTCTACGTGGCGAACGGAAAACTCTCGTGCCAGCTGTACCAGCG 491 Query 38149 CTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCA 38208 ||| | |||| || | || | ||||| || ||||| |||||||| ||| | || || Sbjct 490 CTCGGGCGATATTTTCCTCGGCATCCCGTTCAATATCGCCAGCTACGCACTGCTCACCCA 431 Query 38209 TATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGACGT 38268 |||| | ||||| || |||| || || ||| || | ||| ||||| | Sbjct 430 TATGATCGCCCAGGTCACCGGGCTGGAAGTGGGCGAATTCGTGCATACCCTGGGCGATGC 371 Query 38269 CCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCC 38328 || |||| || || | ||||||||| | ||||||| ||||||||||||| | Sbjct 370 GCACCTGTATTCGAACCACATCGAACAAGCGCAGAAGCAGCTGGCGCGCGAGCCGCGTGC 311 Query 38329 GCTGCCGAAGCTTGTGCTGAA-ACGGAAGCCGCCGTCTATCTTTGACTATGAATACGACG 38387 | |||||||||| |||||||| |||||| | | ||||| || | | ||| | Sbjct 310 GTTGCCGAAGCTGGTGCTGAACCCGGAAG-TGAAGAGCATCTTCGATTTCCGCTTCGAGG 252 Query 38388 ACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGATTAAAGCACCGGTGGCGGT 38442 | | ||||||| |||||||||||| |||||||| || ||||| || || || Sbjct 251 ATGTGTCGATCGTCGACTACGATCCGCACCCGGCGATCAAGGCACCTGTCGCCGT 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130582390617750