Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2604 250 2e-61 seq22877 109 4e-19 >seq2604 Length=2437 Score = 250 bits (276), Expect = 2e-61 Identities = 563/839 (67%), Gaps = 33/839 (4%) Strand=Plus/Minus Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 |||||||| || || |||||||||| |||||| | || || | ||| |||| ||| Sbjct 2436 AAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGAC 2377 Query 61165 TGGGAG-------CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTT 61217 |||| | || | |||||||| ||||| || || ||| |||| || Sbjct 2376 TGGGCGAACCTGACGGACAACGAGCGGTTC-------TTCATCAAGCACGTGCTGGCCTT 2324 Query 61218 CTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGG 61273 ||| || || ||||| ||||| || ||||| | || |||| ||| | | Sbjct 2323 CTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCAATG 2268 Query 61274 AGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCC 61333 | ||||| ||| ||||||| || || |||||||| |||||||| ||||| ||||| ||| Sbjct 2267 AAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCC 2208 Query 61334 ACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAAC 61393 |||| ||| |||| | ||||| || |||||||||| ||| | |||| || | Sbjct 2207 ACTCAGAGGTGTATTCGCTGCTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACC 2148 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 || | ||||||||| ||||| ||| |||||| ||||||| | ||||| ||| Sbjct 2147 ACCTGCTGCGTGCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCA 2088 Query 61454 ATTGGATC-ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 | ||| | ||| | | | | | | || || ||||||| || || | || Sbjct 2087 AGTGGTGCGACCCGCG-AGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTG 2029 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| | || ||| || ||||| | | ||||| ||| | ||||| || || || Sbjct 2028 GAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTC 1969 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || |||| |||| || ||| |||| || |||||||||||||| || Sbjct 1968 ATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGAC 1909 Query 61633 TTTGC-TGTTT--TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG 61689 || || || | || || || || |||||||| | | ||||| || ||| Sbjct 1908 TTCGCGTGCCTCATG-TACTCCAAG-----CTGGTGAACAAGCTGCCGGAGAGCCGCGTG 1855 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 ||||| || || || ||||| || ||||| || || || || |||| | | || Sbjct 1854 CACGAGATCGTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCT 1795 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 || || ||||||||||| | || || |||| ||||| || || || || |||||| Sbjct 1794 GTGGAGCTGATCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGAC 1735 Query 61810 CGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTC 61869 |||||| || | ||||| || | |||||| || || ||||| || || | Sbjct 1734 CGTCTGCTGTACTCGCTGGGTGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGG 1675 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||||||||| |||||| | |||||||| || ||||||||||| || || ||||| || Sbjct 1674 ATGGACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 1616 >seq22877 Length=809 Score = 109 bits (120), Expect = 4e-19 Identities = 445/694 (64%), Gaps = 22/694 (3%) Strand=Plus/Plus Query 65717 GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCA 65776 ||||| | ||||| || || ||||||||||| ||| || || || || |||| Sbjct 134 GTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTC 193 Query 65777 TCGCTCTCGTACGGCATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAAT 65835 ||||||||| || || || ||| |||| ||| | ||| || || || || || ||||| Sbjct 194 TCGCTCTCGAAC-GCGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCCTGGACGCCAAT 252 Query 65836 ACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGAT 65895 ||||||||| || ||||||| ||||| | |||||| || |||||||| |||| Sbjct 253 ACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGCCTCGATCACGGGGTAGTAGTTGAC 312 Query 65896 ATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAA 65955 ||||| | || || ||||| || ||||| | |||| | ||| Sbjct 313 GTCGATGACCTTGTTTAAGTTGCGGGTGACCAC-------CTTCGTCAC-----TTC--- 357 Query 65956 ATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGA 66015 || | || | | | | | | | || | |||| ||||| || || || | ||| Sbjct 358 AT-ACAACTTCTGGTA--GTTGAAAACTCCTTCCTCCACGAACTTAGGCAGCGCCACAGA 414 Query 66016 TGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAG 66075 || | |||||| ||||| | |||||| || | || ||||| | | || ||| | Sbjct 415 CGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACCTCACAGCATAA 474 Query 66076 ATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTT 66135 || ||| |||| || ||||| | ||||| || || |||||| ||| || ||||| Sbjct 475 GTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTT 534 Query 66136 GTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGC 66195 ||||| ||| | || || ||||| | |||| || | |||||| ||| || Sbjct 535 GTACAACATAAAGGGCACTCCCGTCTCGATCTGGGCGTCCAATATGGCGAACCACAGCTG 594 Query 66196 GCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTT 66254 | || || | ||| | | | | | | | ||| ||||| | ||| |||||| | Sbjct 595 CTGGGCGTTGATCGT-CTTGCGGGCGCGTCCCTCCGTCTCGTACTTTTCATAGAGGGCCT 653 Query 66255 CGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACC 66314 |||| || ||||| || | || | || || || || || | || || Sbjct 654 CGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCAAAAGAGACTCC 713 Query 66315 AATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGA 66374 | | |||| ||| || | ||| || |||||||| | ||| ||||||||||| | Sbjct 714 ACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAAAGGGCGTAGAACA 773 Query 66375 GATCGCGTGCTCGTTGCTCCTCAATGCCGTGATT 66408 | ||||| || || ||| ||| ||||||| || Sbjct 774 GGTCGCGAGCGCGGTGCAACTCGTTGCCGTGGTT 807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397388067556400