Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq4411 159 5e-34 seq25497 95.1 2e-14 >seq4411 Length=21687 Score = 159 bits (176), Expect = 5e-34 Identities = 225/315 (71%), Gaps = 1/315 (0%) Strand=Plus/Minus Query 196777 GTTGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACAT 196836 |||||| || ||||| ||||| ||||||||||| || |||||||| || ||||||||||| Sbjct 3482 GTTGTCCTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGTTCAACAT 3423 Query 196837 CGCGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGA 196896 ||| ||||||||| ||| || ||||||||||| || | ||| |||||| Sbjct 3422 CGCCAGCTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGCCTGGATGTGGGCGA 3363 Query 196897 GTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGA 196956 ||| | ||||| || || ||| ||| | ||| ||||||| | |||||||| || Sbjct 3362 CTTCATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAACAGGTGCAAAC 3303 Query 196957 ACAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAG 197016 ||||| | || ||| || |||||| ||| | ||| ||||| || || Sbjct 3302 GCAGCTCGCGCGCGCGCCGTTCCCGCTGCCGAAGCTTGAGATCGCGCGCAAGCCCGATTC 3243 Query 197017 TATCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGAT 197076 |||||||||||||| ||||| |||||| | | | || ||||| ||||||| || Sbjct 3242 GATCTTCGATTACAAGTTCGAGGACTTCCATATCATCGGATACGAAGCGCATCC-GCACA 3184 Query 197077 TAAAGCCCCGGTGGC 197091 | |||| |||||||| Sbjct 3183 TCAAGCGCCGGTGGC 3169 Score = 138 bits (152), Expect = 2e-27 Identities = 182/251 (73%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 196115 GACAAAGCTGACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTC 196174 |||||| | ||||| || ||||||||||| || ||||| |||||||||||| Sbjct 3907 GACAAAACCGACCGCACGGGCACAGGCACGCGCTCGGTGTTCGGCTATCAGATGCGCTTC 3848 Query 196175 GATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATT 196234 || ||||| || || |||||||| ||||||||||| ||| | || | || ||| | Sbjct 3847 GACCTGCAGGAAGGGTTCCCGCTCGTCACCACGAAAAAAGTGCACATCAAATCGATCGTG 3788 Query 196235 CATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGT 196294 || ||||||||||||||||| | || ||||||| | || || | || ||||| Sbjct 3787 CACGAACTGCTGTGGTTCCTGCAAGGCAGCACCAACGTGCGCTATTTGCAGGAAAACGGC 3728 Query 196295 GTCTCTATCTGGAACGAGTGGGCGAA---CGAACTCGGTAACCTGGGGCCGGTTTACGGT 196351 ||||| ||||||||||| |||||| | |||| ||| | || ||||| || ||||| Sbjct 3727 GTCTCCATCTGGAACGAATGGGCGGATGCCGAA---GGTGAACTCGGGCCCGTCTACGGC 3671 Query 196352 AAGCAGTGGCG 196362 ||| ||||| Sbjct 3670 GCGCAATGGCG 3660 >seq25497 Length=733 Score = 95.1 bits (104), Expect = 2e-14 Identities = 217/318 (68%), Gaps = 14/318 (4%) Strand=Plus/Minus Query 196781 TCTTGTCAGCTGTATCAGCG-TAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGC 196839 || || |||||||| ||||| | | ||| |||| |||||||| | |||||||| ||||| Sbjct 510 TCGTGCCAGCTGTACCAGCGCTCGGGCG-ATATTTTCCTCGGCATCCCGTTCAATATCGC 452 Query 196840 GTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACA---TGGTACCGGGCGA 196896 |||||| |||| | || ||| | || || ||| | | ||| | |||||| Sbjct 451 CAGCTACGCACTGCTCACCCATATGATCGCCCA---GGTCACCGGGCTGGAAGTGGGCGA 395 Query 196897 GTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGA 196956 ||||| || || || | ||| | || || || ||||| ||||| | | ||| Sbjct 394 ATTCGTGCATACCCTGGGCGATGCGCACCTGTATTCGAACCACATCGAACAAGC-GCAGA 336 Query 196957 A-CAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACA 197015 | |||||| | || | ||| |||||||||| |||||| | || | || | | | Sbjct 335 AGCAGCTGGCGCGCGAGCCGCGTGCGTTGCCGAAGCTGGTGCTGAACCCGGAAGTGAAGA 276 Query 197016 GTATCTTCGATTACAAATTCGAAGACTT--CGAACTGGTAGGCTACGATCCGCATCCGGC 197073 | |||||||||| | ||||| || | ||| | || | |||||||||||| ||||| Sbjct 275 GCATCTTCGATTTCCGCTTCGAGGATGTGTCGATC--GTCGACTACGATCCGCACCCGGC 218 Query 197074 GATTAAAGCCCCGGTGGC 197091 ||| || || || || || Sbjct 217 GATCAAGGCACCTGTCGC 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771184259662200