Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq73 93.3 6e-17 seq277 80.6 4e-13 >seq73 Length=59793 Score = 93.3 bits (102), Expect = 6e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 ||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| || Sbjct 38481 CATCAGTGTAGTGCGCGTGCGGCTCAGAACGTCTAAGGGCATCACAGACCTGTTATTTCC 38540 Query 219 T 219 | Sbjct 38541 T 38541 >seq277 Length=38099 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/96 (80%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 10 GCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAA 69 ||||||||||| |||| || ||| |||||| | | | |||||||||| ||||||||| || Sbjct 17471 GCAGGGACGTAATCAATGCAAGC-TGATGAGTTGGGTTTACTAGGAA-TTCCTCGTTCAA 17414 Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATG 105 ||| | |||||||| |||||||| | ||| ||| Sbjct 17413 GACTGAAAATTGCAACATTCTATCCCTAGCACTATG 17378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751931273310