Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq8094 104 6e-20 >seq8094 Length=3401 Score = 104 bits (114), Expect = 6e-20 Identities = 232/342 (68%), Gaps = 16/342 (5%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 3028 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 3086 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGAC--AG 118 || ||| ||| ||||||| | | ||||||||| || | ||| |||| | |||| | Sbjct 3087 GCGAGCATTATTCGGAATGATTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGTTGAAA 3146 Query 119 GTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG----ACTGCACGACTAGAGT 174 | |||| | || ||| | | ||||| | |||| ||| |||| Sbjct 3147 GAAACAAATTAAAG--CTCAACTTTATA----CATTTTTTCAAAACTGATAAACTGGAGT 3200 Query 175 GTGTC-AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAA 233 | ||||| ||||||| | || || | |||| ||| |||| | ||||| Sbjct 3201 ATAAATAGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAA 3260 Query 234 CACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGG 293 | | |||||||||||| ||||| | |||||| || | |||||||| |||| Sbjct 3261 GATCTATGGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCTTGGGT 3320 Query 294 AGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACG 335 ||| ||| ||||||||||||| ||||||||| || |||||| Sbjct 3321 AGCGAACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACG 3362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289478339136