Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq9013 82.4 1e-13 >seq9013 Length=1413 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 149 TTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCC 208 || |||||||||||| | ||||||||||| |||||| | | ||||| | | | || Sbjct 904 TTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAATATAGTTCTCTCATTCACC 845 Query 209 TTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||||| | ||| |||| ||||||||||||||||| |||| Sbjct 844 TTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGGGTA 805 Score = 77.0 bits (84), Expect = 5e-12 Identities = 73/92 (79%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 1107 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 1049 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATT 98 ||||||| ||||||||||| ||| ||||| Sbjct 1048 AAGTTTTTATTAAACAGTCGCAACCCCCTATT 1017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694336537482