Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq7855 235 2e-59 seq5601 84.2 7e-14 >seq7855 Length=1583 Score = 235 bits (260), Expect = 2e-59 Identities = 354/499 (71%), Gaps = 37/499 (7%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1253 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 1194 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | Sbjct 1193 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-----------CCAATTTTTATT 1145 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | ||| | | | ||||| | ||||||| ||||||||||||||| Sbjct 1144 TAAAATTTT----------ATATA-AAAAACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 1096 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA--TC 244 | |||| ||||| |||||| ||| |||||||||||||| || |||||||| | | Sbjct 1095 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATTGTTAGTTGCTAATTT 1036 Query 245 ATT--AAGTT-----GGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||| || || | ||||||| | ||| | |||||||||| Sbjct 1035 ATTAAAAATTAATAAAAGTACTCTAACGAAAAAATTAATGATAGGTTAATGGAAGGTGGG 976 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| || ||||| ||||||||| ||||||||||||||||||||||| || || Sbjct 975 GATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAAT-GATAA 917 Query 358 T-ACA---AAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTT 413 | ||| | |||| | | || | ||||||| | |||| | ||| |||| Sbjct 916 TCACAGTGAGAGGCAATAATAATAAAAGTTGGAGCAAAT-CTTTAAAAATTATCTTAGTT 858 Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473 |||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| |||| Sbjct 857 CGGATTAAGGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGC 798 Query 474 ATGCTACGGTGAATACGTT 492 ||||| ||||||||| ||| Sbjct 797 ATGCTGCGGTGAATATGTT 779 Score = 118 bits (130), Expect = 3e-24 Identities = 86/100 (86%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1513 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 1454 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACA 106 |||||||| ||||| ||||||||||||| ||||| || Sbjct 1453 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTGCCA 1414 >seq5601 Length=4052 Score = 84.2 bits (92), Expect = 7e-14 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 161 TGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCG 220 |||||||||| |||||||||||||||| |||| ||||| |||||| ||| |||||||| Sbjct 1093 TGATGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTTGGTTAAATCCTTTAACGAGCG 1152 Query 221 CAACCCTTA 229 |||||| || Sbjct 1153 CAACCCCTA 1161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503858112640