Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq257 315 1e-83 seq2859 228 1e-57 >seq257 Length=39001 Score = 315 bits (348), Expect = 1e-83 Identities = 215/241 (89%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 55 GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 34999 GTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACAAT 35058 Query 115 TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGT 174 | ||| |||| ||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 35059 TGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGT 35118 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC-CTGTGGTAACTTTTCTGGCACCT 233 |||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 35119 CGCTATGAACGCTTGGCTACCACAAGCCAGATATCCTCTGTGTTAACTTTTCTGACACCT 35178 Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| | ||||| | | ||||||||||||||||| ||| |||||| | ||||||||| Sbjct 35179 CTAGCTTAAAATTCTAAAGAACTAAAGGATCGATAGGTCACGCTTTCACGATTTGTATTC 35238 Query 294 A 294 | Sbjct 35239 A 35239 >seq2859 Length=7311 Score = 228 bits (252), Expect = 1e-57 Identities = 155/174 (89%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||| | ||||| |||||||||||||| |||||||||| ||||||||| || |||||||| Sbjct 2215 ATTTTTCTTCGCAATGATAGGAAGAGCTGACATCGAAGAATCAAAAAGGAATGTCGCTAT 2156 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 2155 GGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 2096 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||| | | ||||||||||||||||||||| |||||| |||||||||||| Sbjct 2095 AAAATTCTAAAGAACTAAAGGATCGATAGGCCACGCTTTCACGGTTTGTATTCA 2042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854319395904