Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= AAMG01001674.1 Length=313 Score E Sequences producing significant alignments: (Bits) Value seq887 80.6 5e-13 >seq887 Length=20719 Score = 80.6 bits (88), Expect = 5e-13 Identities = 152/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 35 GACGAAGAGATTGTCCAGCGTATTGCTGGCCGTCGCGTACAAGAAGCCTCGGGCCGCGTG 94 ||||| | | | || |||| || || ||||| ||||| || ||| |||||| Sbjct 6257 GACGAGGTGCTGGTGGAGCGCATCGCGGGCCGCCGCGTGCACCCGGCCAGCGGCCGCAGC 6198 Query 95 TACCACACCGTCTACAATCCGCCAAAGGTTGCAGGCAAGGACGATGTGACCGGCGAAGAC 154 |||||| | | | ||||| ||||| || |||||||||||| | || ||||| | Sbjct 6197 TACCACGTCAAGTTCGCCCCGCCTAAGGTGGCCGGCAAGGACGATATCACGGGCGAGCCC 6138 Query 155 CTGGTACAGCGCAAGGACGACACCGAAGAAACCGTTCGTCAC-CGCCTGTCTGTTTACCA 213 ||| | |||||||||||||||| ||| | | || ||| | | || || | | ||| Sbjct 6137 CTGATCCAGCGCAAGGACGACAACGAGGCCA-CGCTCGGCTCGCGTCTCCAGGCCTTCCA 6079 Query 214 TTCGCAAACCAAGCCGCTGGTGGACTTCTACCAGAAGCTGG 254 ||| ||| ||||| || | |||||||||| |||| || Sbjct 6078 CAAGCAGACCCAGCCGGTGATCGACTTCTACCGCAAGCAGG 6038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899115169472