Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq8094 181 3e-43 >seq8094 Length=3401 Score = 181 bits (200), Expect = 3e-43 Identities = 181/229 (79%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 274 AGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAG 333 ||||| |||||||||| ||| |||||| || ||||| |||| ||| || ||| ||||| Sbjct 2917 AGGCA--AGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGTAATACCGAGTGAG 2974 Query 334 CGATGAAGGCCT-TCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGA 392 ||||||||| | ||| |||||||||| || | ||||| || |||||| |||||| | Sbjct 2975 TGATGAAGGCTAATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAA 3034 Query 393 GGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 450 | |||| |||||||| ||| ||||||||||||||||||||||| || || ||| Sbjct 3035 AAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCA 3093 Query 451 TTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| |||||| | | |||||||||||| ||||||||||| |||||| Sbjct 3094 TTATTCGGAATGA-TTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT 3141 Score = 122 bits (134), Expect = 3e-25 Identities = 139/184 (76%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| ||||| | ||||||||| ||| | ||||||| | | ||| |||| | Sbjct 2738 GCGTAAGATTATGGTAGTTGGTAGTTTAATAGACTACCAAGCCTATTATCTTTAGCTGGT 2797 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||| || ||||| |||||||||| |||||||||||| ||||||| | |||||| Sbjct 2798 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAG 2856 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| ||| |||||| || ||||| |||| ||| || ||| ||||| ||||| Sbjct 2857 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGTAATACCGAGTGAGTGATGA 2916 Query 340 AGGC 343 |||| Sbjct 2917 AGGC 2920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497458716416