Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq835 183 1e-43 seq1424 122 3e-25 seq749 89.7 2e-15 >seq835 Length=38486 Score = 183 bits (202), Expect = 1e-43 Identities = 107/111 (96%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 5720 CATTTGGCTACCTTAAAAGAGTCATAGTTACTCCCGCCGTTTACCCGCACTTGGTTGAAT 5779 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5780 CTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 5830 >seq1424 Length=14054 Score = 122 bits (134), Expect = 3e-25 Identities = 76/82 (93%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||| |||||| ||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 2943 TTAAGAGAATCATAGATACTCCCGCTGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTG 3002 Query 495 ACATTCAGAGCACTGGGCAGAA 516 |||||||||||||| |||||| Sbjct 3003 ACATTCAGAGCACTTAGCAGAA 3024 >seq749 Length=23810 Score = 89.7 bits (98), Expect = 2e-15 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| ||||| | |||||||||||||| ||||| Sbjct 3356 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGTTCACCTTAGGACACCTGTGTTATC 3415 Query 67 GTTTAACAGATG 78 ||||||||||| Sbjct 3416 ATTTAACAGATG 3427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635045735232