Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq9013 170 7e-40 >seq9013 Length=1413 Score = 170 bits (188), Expect = 7e-40 Identities = 212/291 (73%), Gaps = 22/291 (8%) Strand=Plus/Minus Query 275 CAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGC-GCGAAACGAGC 332 ||||| ||| | |||| ||||| | |||||||||| |||| | | ||| | || Sbjct 1342 CAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGTCTAACTATAGAGAATCC-GC 1284 Query 333 ATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTAC 392 ||||| || || | ||| ||||| | | || | | |||||||| ||| |||||||| Sbjct 1283 ATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTTAC 1224 Query 393 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATA 452 |||||| |||||||||||||||||||||||||||||||||||||||||||| || | | Sbjct 1223 ACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCAGA 1164 Query 453 GTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTC 512 ||||| ||||||||||||||| |||| ||| | || || Sbjct 1163 GTTACGGCCGCCGTTTACTGGGACTTCCATT-------------------TAATGCGCAA 1123 Query 513 ACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 || |||| |||| |||||||||||||||||| ||||| || ||||| || Sbjct 1122 ACATTTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATC 1072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702239395584