Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F002025925.1_202017-03-14] 9,434 sequences; 74,863,594 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1023 224 8e-54 seq584 215 4e-51 seq7744 109 4e-19 >seq1023 Length=18726 Score = 224 bits (248), Expect = 8e-54 Identities = 1101/1715 (64%), Gaps = 69/1715 (4%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 |||||||||||||||||||| || ||| || ||||| |||||||| | | | || Sbjct 2211 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACG-TGAGCTT 2269 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || | || |||| ||||| | || || || | |||||||||||| ||||| || Sbjct 2270 GC-TGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTACGCAC 2328 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTAC 65299 | || || || | || ||| | | || | || | |||||||| || ||||||||| Sbjct 2329 CGCGGTCGGCCGACAGGTCCAGCAC-CGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 2387 Query 65300 AGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAA 65357 | | | || | || ||| ||| | || ||| || || || | | ||| ||| Sbjct 2388 TT-CTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGCCGCTGTCGTTCAA 2446 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGT 65417 | | | || |||| | | ||| | || | ||||| || | | | || || Sbjct 2447 GA-TCTGGTTGCGCACGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTCATCAGGT 2505 Query 65418 GACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACG 65474 || ||| |||| | | |||||| || | ||| || || ||| || |||||||||| Sbjct 2506 -AC--TTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTACATGTTGGACG 2562 Query 65475 TGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGG 65534 || || || | || || |||| || || || ||||| || || || || ||||||| Sbjct 2563 TGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGCATGG 2622 Query 65535 GAGCGACCAACAATGAGTTTCGCAATCCGT------TCATTTCAATGTTGTGACGCAATT 65588 | || |||| || ||||| || | ||||| ||| || ||| | || | Sbjct 2623 GGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTGATCACGTCCTCCTTGAG-CGTAG-- 2679 Query 65589 CGTCCCAGTTCCACATCGGTTTATCGTCGACATCC--ACGGGCCACATATCCTGTTGCAG 65646 ||||||||||||| || |||| ||| |||||| || || | Sbjct 2680 ---CCCAGTTCCACATACC-----CGACGACGGGGTGACGCCCCACATGTCGAACTGGAA 2731 Query 65647 GGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAG 65706 | | || | || || || || || |||| | |||||| || |||||||| | Sbjct 2732 GATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGGCGAT 2791 Query 65707 TTGACAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTT 65765 | || | ||||| | ||||| || || ||||||||||| ||| || || | Sbjct 2792 CTC-CATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCT 2850 Query 65766 CACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCT 65824 | || |||| ||||||||| ||| | || ||| |||| ||| | ||| || || || Sbjct 2851 CCCGGGCCTTCTCGCTCTCGAACG-CGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCC 2909 Query 65825 TGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGG 65884 || || |||||||||||||| || ||||||| ||||| | |||||| || ||| Sbjct 2910 TGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGCCTCGATCACGGGG 2969 Query 65885 TAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGC 65944 ||||| |||| ||||| | || || ||||| || ||||| | | ||| | Sbjct 2970 TAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTC-------GTCAC 3022 Query 65945 AATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGA 66004 ||| | ||| | | || | | | | || | |||| ||||| || Sbjct 3023 -----TTCATA--CAACTTCT---GGTAGTTGAAAACT-CCTTCCTCCACGAACTTAGGC 3071 Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || || | ||| || | |||||| ||||| | |||||| || | || ||||| | | Sbjct 3072 AGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCTGGCGACGTGTACTCCATCACC 3131 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||| | || ||| |||| || ||||| | ||||| || || |||||| ||| Sbjct 3132 TCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTG 3191 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || |||||||||| ||| | || || ||||| | |||| || | |||||| Sbjct 3192 GCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCGATCTGGGCGTCCAATATGGCG 3251 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTC 66243 ||| || | || || | ||| | | | | | | | ||| ||||| | ||| Sbjct 3252 AACCACAGCTGCTGGGCGTTGATCGT-CTTGCGGGCGCGTCCCTCCGTCTCGTACTTTTC 3310 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACA 66303 |||||| ||||| || ||||| || | || | || || || || || Sbjct 3311 ATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCA 3370 Query 66304 CATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAG 66363 | || ||| | |||| ||| || | ||| || |||||||| | ||| || Sbjct 3371 AAAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAAAG 3430 Query 66364 GGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAG 66423 ||||||||| || ||||| || || ||| ||| ||||||| || || || | ||| | Sbjct 3431 GGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCGTTGCCGTGGTTCTTACGGAGGTCCAA 3490 Query 66424 GAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTT 66483 |||||| || | || || ||||| || |||| ||||||||||| |||||| |||| || Sbjct 3491 GAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTACGCTT 3550 Query 66484 GCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAG 66543 ||| || || ||||| ||||| || ||| | ||| || || |||| ||| || | || Sbjct 3551 GCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATGAT 3610 Query 66544 CCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAA 66602 || || || ||| || ||||| ||| | | | | || || || || | ||| | Sbjct 3611 GCCATTGGACGAGCCGTTCGTGCC-TCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCA 3669 Query 66603 CATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAAT-CGGCCAC-TGTCCG 66660 | | | |||||||| |||||| || ||||| ||||| | | || |||| Sbjct 3670 TACTGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTGTC-- 3727 Query 66661 GAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGG 66720 | | ||||| ||||| ||||| | | |||| || ||| |||| || ||||| || Sbjct 3728 GTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGTGG 3787 Query 66721 TTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGT--AAAGTAATGGCGAGAC 66778 || ||| |||| || || || || || || ||||| ||| | | || ||| Sbjct 3788 GCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGC--GAC 3845 Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTT 66813 ||| | ||||||||| | | | || ||||||| Sbjct 3846 ATGAGCTCGTACGTCTCCAGGGCGGCCGCAATGTT 3880 >seq584 Length=26749 Score = 215 bits (238), Expect = 4e-51 Identities = 520/780 (67%), Gaps = 33/780 (4%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 11871 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 11812 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--- 61170 || || |||||||||| |||||| | || || | | ||| |||| ||||||| | Sbjct 11811 GCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGCGCACGACCTGAAGGACTGGGCGAAC 11752 Query 61171 ----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGC 61226 || | |||||||| ||||| || || ||| |||| ||||| || || Sbjct 11751 CTGACGGACAACGAGCGGTTC-------TTCATCAAGCACGTGCTGGCCTTCTTCGCTGC 11699 Query 61227 TTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 ||||| ||||| || ||||| | || |||| ||| | || ||||| | Sbjct 11698 CAGCGACGGCATCGTGAACGAGAACCTGGCCAT--GAAC--TTCAGCAATGAAGTGCAGG 11643 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 || ||||||| || || |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct 11642 TGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCGGAGG 11583 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCA 61402 |||| | ||||| || |||||||||| ||| | |||| || | || | Sbjct 11582 TGTATTCGCTGCTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGC 11523 Query 61403 ATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC- 61461 ||||||||| ||||| ||| |||||| ||||||| | ||||| |||| ||| | Sbjct 11522 GTGCCATCGATACGATTCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCG 11463 Query 61462 ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTA 61521 ||| | | | | | | || || ||||||| || || || ||||| | Sbjct 11462 ACCCG-CGAGTGTCGTCGTACCCGGAGCGCGTGCTGGCGTTCGCAACCGTGGAGGGCATC 11404 Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581 || ||| || ||||| | | ||||| ||| | ||||| || || || ||||| || Sbjct 11403 TTCTTCTCGGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGC 11344 Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG- 61639 |||| |||| || ||| |||| || |||||||||||||| || || || || Sbjct 11343 CTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGC 11284 Query 61640 -TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATT 61698 | || || || | | |||||||| | | ||||| || ||| ||||| Sbjct 11283 CTCATG-TACTC-----CAAGCTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGAGATC 11230 Query 61699 GTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTC 61758 || || || ||||| || ||||| || || || || |||| | | || || || Sbjct 11229 GTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTG 11170 Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 ||||||||||| | || || |||| || || || || || || |||||||||||| || Sbjct 11169 ATCGGCATGAACTCGGGGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGTCTGCTG 11110 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 61850 CGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG 61909 |||| ||||| || |||| ||||||||||| |||||| | |||||||| || ||||||| Sbjct 6651 CGAAGAACCCGTTCGATTGGATGGACATGATCTCGCTGTAGGGCAAGACCAACTTTTTCG 6592 Query 61910 AGAAACGTGTAGGCGACTA 61928 ||||||| || ||||| || Sbjct 6591 AGAAACGCGTGGGCGAGTA 6573 >seq7744 Length=2697 Score = 109 bits (120), Expect = 4e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 || ||||||||||| | || || |||| ||||| || || || || |||||||||||| Sbjct 2089 CTGATCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTG 2148 Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 || | ||||| || | |||||| || || ||||| || || | |||||| Sbjct 2149 CTGTACTCGCTGGGTGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGAC 2208 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| |||||| | |||||||| || ||||||||||| || || ||||| || Sbjct 2209 ATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 2261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397522288873760