Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq23 228 1e-57 seq8 228 1e-57 seq1 131 3e-28 seq4 116 7e-24 >seq23 Length=187360 Score = 228 bits (252), Expect = 1e-57 Identities = 203/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 162279 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 162338 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| || | || | |||||||||||||||| | ||| |||||| Sbjct 162339 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGTAATG 162397 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 162398 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCG 162457 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 162458 CTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 162516 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 162517 AAGTTAGGGG 162526 Score = 228 bits (252), Expect = 1e-57 Identities = 203/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 183898 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 183957 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| || | || | |||||||||||||||| | ||| |||||| Sbjct 183958 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGTAATG 184016 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 184017 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCG 184076 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 184077 CTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 184135 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 184136 AAGTTAGGGG 184145 >seq8 Length=3549547 Score = 228 bits (252), Expect = 1e-57 Identities = 203/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 3547448 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 3547507 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| || | || | |||||||||||||||| | ||| |||||| Sbjct 3547508 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGTAATG 3547566 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 3547567 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCG 3547626 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 3547627 CTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 3547685 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 3547686 AAGTTAGGGG 3547695 >seq1 Length=13391543 Score = 131 bits (144), Expect = 3e-28 Identities = 116/142 (82%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 11147467 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 11147526 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 || |||| || ||| || | || | |||||||||||||||| | ||| |||||| Sbjct 11147527 TGTAATAGTAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACCAGGGTAATG 11147585 Query 189 ATTAATAGGGATAGTCGGGGGT 210 ||||||||||| ||| |||||| Sbjct 11147586 ATTAATAGGGACAGTTGGGGGT 11147607 >seq4 Length=7609242 Score = 116 bits (128), Expect = 7e-24 Identities = 103/126 (82%), Gaps = 6/126 (5%) Strand=Plus/Plus Query 84 AAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCATGGAATAATA 139 ||||||||||||||| ||||||| | ||||||| ||||||||||||||||||||||| Sbjct 7170825 AAAAATTAGAGTGTTTAAAGCAGCCGTTTGCTCATTTGAATACATTAGCATGGAATAATA 7170884 Query 140 GAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGG 198 ||| || | || | |||||||||||||||| | ||| |||||||||||||||| Sbjct 7170885 AGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACCAGGGTAATGATTAATAGGG 7170943 Query 199 ATAGTC 204 ||| || Sbjct 7170944 ATATTC 7170949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199249536