Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq14 120 9e-25 seq4 116 1e-23 >seq14 Length=1806347 Score = 120 bits (132), Expect = 9e-25 Identities = 144/191 (75%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAG 364 ||| || ||||| ||||||||| |||||| ||||||||||||||||| | ||| |||| | Sbjct 220626 CAAGTCTTCATGGCCCTTATGAGTTGGGCGACACACGTGCTACAATG-ATAATCACAATG 220684 Query 365 ---GGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGT 421 |||| | | || | |||||||| ||| || | || |||||||||| Sbjct 220685 AGAGGCAATAATAATAAAAGTTGGAGCAAATCTTTAAAAATTAT-CTTAGTTCGGATTAA 220743 Query 422 AGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACG 481 | ||| |||||| | ||||||| |||||||||||||| ||| ||| ||||||||| | Sbjct 220744 GGGCTGAAACTCGCCCTTATGAAGTTGGAATCGCTAGTAGTCGCAGAACAGCATGCTGTG 220803 Query 482 GTGAATACGTT 492 ||||||| ||| Sbjct 220804 GTGAATATGTT 220814 Score = 75.2 bits (82), Expect = 3e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 48 AGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| Sbjct 220409 AGCGGTGGAGCATGTGGTTTAATTCGATAATACGCGCAGAACCTTACCAACTCTTG 220464 >seq4 Length=7609242 Score = 116 bits (128), Expect = 1e-23 Identities = 84/97 (87%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 5399556 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 5399615 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 |||||||| ||||| ||||||||||||| ||||| Sbjct 5399616 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG 5399652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503998766720