Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq23 136 4e-30 seq8 136 4e-30 seq1 102 8e-20 seq4 87.8 2e-15 >seq23 Length=187360 Score = 136 bits (150), Expect = 4e-30 Identities = 140/179 (78%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||| || Sbjct 162279 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 162338 Query 69 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||| || | || | |||||||||| ||||| | ||| ||||| Sbjct 162339 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACC-AGGGTAAT 162396 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| ||| ||| |||||| | |||| | |||| ||||||||||||||||| Sbjct 162397 GATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGAT 162455 Score = 136 bits (150), Expect = 4e-30 Identities = 140/179 (78%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||| || Sbjct 183898 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 183957 Query 69 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||| || | || | |||||||||| ||||| | ||| ||||| Sbjct 183958 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACC-AGGGTAAT 184015 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| ||| ||| |||||| | |||| | |||| ||||||||||||||||| Sbjct 184016 GATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGAT 184074 >seq8 Length=3549547 Score = 136 bits (150), Expect = 4e-30 Identities = 140/179 (78%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||| || Sbjct 3547448 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 3547507 Query 69 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||| || | || | |||||||||| ||||| | ||| ||||| Sbjct 3547508 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACC-AGGGTAAT 3547565 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| ||| ||| |||||| | |||| | |||| ||||||||||||||||| Sbjct 3547566 GATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGAT 3547624 >seq1 Length=13391543 Score = 102 bits (112), Expect = 8e-20 Identities = 111/143 (78%), Gaps = 7/143 (5%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||| || Sbjct 11147467 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 11147526 Query 69 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 || |||| || ||| || | || | |||||||||| ||||| | ||| ||||| Sbjct 11147527 TGTAATAGTAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACC-AGGGTAAT 11147584 Query 128 GATAAATACGGATAGTCGGGGGT 150 ||| |||| ||| ||| |||||| Sbjct 11147585 GATTAATAGGGACAGTTGGGGGT 11147607 >seq4 Length=7609242 Score = 87.8 bits (96), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 7/127 (6%) Strand=Plus/Plus Query 23 AAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCATGGAATAATA 78 ||||||||||| ||| ||||||| | ||||||| |||||||||| |||||||||||| Sbjct 7170825 AAAAATTAGAGTGTTTAAAGCAGCCGTTTGCTCATTTGAATACATTAGCATGGAATAATA 7170884 Query 79 GAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACG 137 ||| || | || | |||||||||| ||||| | ||| |||||||| |||| | Sbjct 7170885 AGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACC-AGGGTAATGATTAATAGG 7170942 Query 138 GATAGTC 144 |||| || Sbjct 7170943 GATATTC 7170949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511999593280