Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq23 600 4e-169 seq2 176 1e-41 seq5 158 4e-36 >seq23 Length=187360 Score = 600 bits (664), Expect = 4e-169 Identities = 459/538 (85%), Gaps = 13/538 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 117528 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 117469 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || | || Sbjct 117468 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTC 117409 Query 127 GGCCCG-CGAAGGACC----TTAACGCCAGAAA--ATGGTCGGTGAAGAC---CAGTTCC 176 || | | || | || ||| | |||| | | | | || | | ||| | | Sbjct 117408 ACCCAGACAAAAGCCCGAGATTACAACTAGAACTGAGCGACCGCGAGGCCACCCAGATGC 117349 Query 177 G-CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 | |||| | ||||||||| ||| | || ||||||||||||||| || | | | Sbjct 117348 TACATCATGGTATAAGTAAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC- 117290 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 117289 -CTCCCACTTATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCA 117231 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 117230 ACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTA 117171 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 117170 GACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGAT 117111 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117110 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 117051 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 117050 GTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 116993 Score = 594 bits (658), Expect = 2e-167 Identities = 458/538 (85%), Gaps = 13/538 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||| | |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 120001 CTTTGGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 119942 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || | || Sbjct 119941 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTC 119882 Query 127 GGCCCG-CGAAGGACC----TTAACGCCAGAAA--ATGGTCGGTGAAGAC---CAGTTCC 176 || | | || | || ||| | |||| | | | | || | | ||| | | Sbjct 119881 ACCCAGACAAAAGCCCGAGATTACAACTAGAACTGAGCGACCGCGAGGCCACCCAGATGC 119822 Query 177 G-CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 | |||| | ||||||||| ||| | || ||||||||||||||| || | | | Sbjct 119821 TACATCATGGTATAAGTAAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC- 119763 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 119762 -CTCCCACTTATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCA 119704 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 119703 ACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTA 119644 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 119643 GACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGAT 119584 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119583 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 119524 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 119523 GTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 119466 Score = 506 bits (560), Expect = 7e-141 Identities = 325/354 (92%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 |||| | ||||||||| ||| | || ||||||||||||||| || | | | ||| Sbjct 139732 TCATGGTATAAGTAAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC--CTC 139675 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| Sbjct 139674 CCACTTATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAG 139615 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| | Sbjct 139614 GGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACA 139555 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 139554 GTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACG 139495 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139494 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 139435 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 139434 AATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 139381 Score = 506 bits (560), Expect = 7e-141 Identities = 325/354 (92%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 |||| | ||||||||| ||| | || ||||||||||||||| || | | | ||| Sbjct 176280 TCATGGTATAAGTAAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC--CTC 176337 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| Sbjct 176338 CCACTTATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAG 176397 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| | Sbjct 176398 GGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACA 176457 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 176458 GTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACG 176517 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176518 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 176577 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 176578 AATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 176631 Score = 127 bits (140), Expect = 7e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 148450 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 148391 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||||||||||||||||||||||||||||||||| Sbjct 148390 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 148356 Score = 120 bits (132), Expect = 1e-24 Identities = 83/94 (88%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 167500 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 167559 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCC 100 |||||||||||||||||||||| |||||||||| Sbjct 167560 ATTTAACAGATGTGCCGCCCCAGTCAAACTCCCC 167593 >seq2 Length=11587142 Score = 176 bits (194), Expect = 1e-41 Identities = 120/135 (89%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 || ||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||| Sbjct 10705885 CGAGTCACTAGTTAGATGATGAGGCATCTGGCTACCTTACGAGAGTCATAGTTACTCCCG 10705944 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 ||||||| | ||||| |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct 10705945 CCGTTTATCTGCGCTCGGTTGAATCTCTTCACTTTGCCATTCAGAACACTGAGCAGAAAC 10706004 Query 519 CACATTGCGTCAACA 533 |||||| ||||||| Sbjct 10706005 TACATTGTGTCAACA 10706019 >seq5 Length=6830280 Score = 158 bits (174), Expect = 4e-36 Identities = 90/92 (98%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 80372 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCA 80431 Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||| ||||||| Sbjct 80432 GAGCACTGGGCAGAAATCACATTGTGTCAACA 80463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635198659136