Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sojae_20[genbank_20GCA_5F000149755.2_202011-10-03] 82 sequences; 82,597,641 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 2e-13 seq5 91.5 6e-13 >seq8 Length=3549547 Score = 93.3 bits (102), Expect = 2e-13 Identities = 167/239 (70%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 222427 GCCCTCGGCGTGGCCTACCTCCACTCGCGCACCCCGTCCATCATCCACCGCGACCTCAAG 222486 |||| || | || ||||||| |||||| || | ||| | |||||||||||||||||||| Sbjct 988374 GCCCACGCCTTGACCTACCTGCACTCGTGCGCGCCGCCAGTCATCCACCGCGACCTCAAG 988315 Query 222487 TCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATG--AAGGTGGCCGACTTTGGGTTCG 222544 ||||||||| | ||| || ||| || || || | |||||| | |||||||| || Sbjct 988314 TCCAGCAACATCCTCCTGAACGAGGCCATG--GACGCCAAGGTGACGGACTTTGGCATCT 988257 Query 222545 CGCGGATCAAGGAAACCAACGCCACCATGAC-ACGGTG--CGGCACGCCGTACTGGACGG 222601 | || || | | |||| |||||||| ||| | ||| ||| || |||| || Sbjct 988256 CTCG---AGAGCGCATCGACGCGACCATGACGGCGGGGGTCGGTACGTCGCTGTGGATGG 988200 Query 222602 CACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGACGTCTACTCGTTCGGC 222660 | || ||| | || ||||| ||| || ||||| ||| | | |||||||||| Sbjct 988199 CTCCGGAGGTGATGCTGGGCGAGCGGTACGATGACAAGGCGGACATGTTCTCGTTCGGC 988141 Score = 93.3 bits (102), Expect = 2e-13 Identities = 167/239 (70%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 222427 GCCCTCGGCGTGGCCTACCTCCACTCGCGCACCCCGTCCATCATCCACCGCGACCTCAAG 222486 |||| || | || ||||||| |||||| || | ||| | |||||||||||||||||||| Sbjct 990308 GCCCACGCCTTGACCTACCTGCACTCGTGCGCGCCGCCAGTCATCCACCGCGACCTCAAG 990249 Query 222487 TCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATG--AAGGTGGCCGACTTTGGGTTCG 222544 ||||||||| | ||| || ||| || || || | |||||| | |||||||| || Sbjct 990248 TCCAGCAACATCCTCCTGAACGAGGCCATG--GACGCCAAGGTGACGGACTTTGGCATCT 990191 Query 222545 CGCGGATCAAGGAAACCAACGCCACCATGAC-ACGGTG--CGGCACGCCGTACTGGACGG 222601 | || || | | |||| |||||||| ||| | ||| ||| || |||| || Sbjct 990190 CTCG---AGAGCGCATCGACGCGACCATGACGGCGGGGGTCGGTACGTCGCTGTGGATGG 990134 Query 222602 CACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAGGCCGACGTCTACTCGTTCGGC 222660 | || ||| | || ||||| ||| || ||||| ||| | | |||||||||| Sbjct 990133 CTCCGGAGGTGATGCTGGGCGAGCGGTACGATGACAAGGCGGACATGTTCTCGTTCGGC 990075 >seq5 Length=6830280 Score = 91.5 bits (100), Expect = 6e-13 Identities = 166/238 (70%), Gaps = 19/238 (8%) Strand=Plus/Minus Query 222472 CACCGCGACCTCAA--GTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAGGTGG 222529 ||||| ||||| || |||| ||| ||||| |||| | | | | || ||| || Sbjct 6619472 CACCGAGACCTGAAAAGTCC--CAATCTGCTGGTGGACAAGAACTTCAACATCAAGTTGT 6619415 Query 222530 CCGACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCC---ACCATGACACGG---TGCG 222583 | |||||||| | || || |||||| || ||| ||||||||| | |||| Sbjct 6619414 CGGACTTTGGACTGGCCCGTGTCAAGG---CCCACGTGCAGACCATGACAGGAAACTGCG 6619358 Query 222584 GCACGCCGTACTGGACGGCACCCGAGATCAT---CACCCAAGAGCGCTACACCGAGAAGG 222640 ||||| | | |||| ||| |||||| | | || ||| || ||||| ||||||| Sbjct 6619357 GCACGGTGCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAGAAG---TACACGGAGAAGG 6619301 Query 222641 CCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCCCTA 222698 ||||||| | ||||||||| ||| |||| |||||| || |||| ||| || |||| || Sbjct 6619300 CCGACGTGTTCTCGTTCGGTATCGTCATCTGGGAGATCGTCACAGGCGAGTGTCCGTA 6619243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084736956299436