Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5168 246 1e-62 seq5207 181 4e-43 >seq5168 Length=2255 Score = 246 bits (272), Expect = 1e-62 Identities = 242/314 (77%), Gaps = 35/314 (11%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 2213 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 2154 Query 464 AACCCGTGCGCGTAATGAAAGTGAACG----------------GAGGTGGGAACCCGTGA 507 ||||| ||||||||||||||| || | ||||| |||| | || Sbjct 2153 AACCCCAGCGCGTAATGAAAGTAAAGGACAGCGTTAGTTGTCTGAGGTAGGAAACTCTGG 2094 Query 508 G--------------GGTG-CACCATCGACCGATCCTGATGTCT--TCG-GATGGATTTG 549 | |||| ||| ||||||||||| ||| || | | || |||||| Sbjct 2093 GCTCTCGGGCTCCGGGGTGGCACTATCGACCGATCATGACCCCTCGTGGCGAAAGATTTG 2034 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 ||| ||||| | |||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 2033 AGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGC 1974 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||| ||||||||||||||| ||||| |||| ||||| |||||||||||||||||||| || Sbjct 1973 CAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTT 1914 Query 670 GGGTATAGGGGCGA 683 |||||||||||||| Sbjct 1913 GGGTATAGGGGCGA 1900 >seq5207 Length=1152 Score = 181 bits (200), Expect = 4e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 436 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 377 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 376 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 317 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 316 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079744723550