Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq953 122 3e-25 >seq953 Length=31761 Score = 122 bits (134), Expect = 3e-25 Identities = 179/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || ||| ||||| || | |||| ||| || |||||||||| Sbjct 7714 ATTCGGAGTTTCTAAGAATTCAGTAAGTTTTTACACCCCTTAGCTCAATGAGTGCTCTAC 7773 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 7774 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 7832 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 7833 CGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 7892 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| || ||||| ||||| ||| ||||| ||||||||| Sbjct 7893 GAGTTCGATCCTCCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCG 7952 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 7953 GTTTCGGGTCTT 7964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817383687424