Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq953 167 4e-39 >seq953 Length=31761 Score = 167 bits (184), Expect = 4e-39 Identities = 195/260 (75%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| ||||| |||||| ||| |||||| | | || |||| ||| || Sbjct 6044 CTTATATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGC-CTTAACA- 6101 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 6102 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 6160 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 6161 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 6220 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 6221 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 6280 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 6281 GATGTGATGAGTCGACATCG 6300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780709980836