Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq953 232 2e-58 >seq953 Length=31761 Score = 232 bits (256), Expect = 2e-58 Identities = 258/337 (77%), Gaps = 8/337 (2%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| | ||||||| ||| | ||||||| |||| ||| |||| | ||| || Sbjct 18934 GATTAGGTTGTTGGTAGTTTAAAAGACTACCAAGCCGACTATCTTTAGCTGGTTTGAAAG 18993 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 ||||| ||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 18994 AATGATCAGCCACATTGGAACTGAGACACGGTCCAAACT-TTTTTAAAGGCAGCAGTGGG 19052 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC--C 344 |||| ||| |||||| || ||||| |||| |||||| || ||||| || |||||| Sbjct 19053 GAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCAAGTGAGTGAAGAAGGCTAA 19112 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 || || | ||||| |||| || | ||||| || |||||| ||||| | | |||| || Sbjct 19113 TTAGGCT-GTAAATCTCTTTCATTAAGGAGGAAAATGACATTACTTAAAAAAGAAGTTCC 19171 Query 405 GGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||| || |||||||||||||||||||||||| || || ||| |||| |||||| Sbjct 19172 GGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAATG 19230 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | ||||||||| || |||||| |||| |||||| Sbjct 19231 A-TTAGGCGTAAAGAGTTTGTAGGTTGTTTTTTAAGT 19266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497421770624