Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5168 587 2e-165 seq1674 587 2e-165 seq1513 587 2e-165 seq6927 554 1e-155 seq914 506 7e-141 >seq5168 Length=2255 Score = 587 bits (650), Expect = 2e-165 Identities = 456/540 (84%), Gaps = 15/540 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 33 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 92 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || | | Sbjct 93 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTT 152 Query 127 GGCCC-GCGAAGGACC------TTAACGCCAGAAAATGGT-----CGGTGAAGACCAGTT 174 || || || || | || | |||| || || || | | || | Sbjct 153 ACCCGAGCAAAAGAGCCCAGGCTTCCATCTAGAACTAGGCGCCCGCGAGGACGGCTAGGT 212 Query 175 CCG-CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 | | |||| | ||||||||| ||| || |||||||||||||||| || | || Sbjct 213 GCTACATCATGGTATAAGTAAAACAACATTAGAAGTAGTGGTATTTCACTGACGGCAAAG 272 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| Sbjct 273 C--CTCCCACTTATTCTACACCTCCTAAGTCATTTCACAACGTCAGACTAGAGTCAAGCT 330 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 331 CAACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGC 390 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 391 TAGACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAG 450 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 451 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 510 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 511 TGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 570 >seq1674 Length=1235 Score = 587 bits (650), Expect = 2e-165 Identities = 456/540 (84%), Gaps = 15/540 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 1203 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 1144 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || | | Sbjct 1143 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTT 1084 Query 127 GGCCC-GCGAAGGACC------TTAACGCCAGAAAATGGT-----CGGTGAAGACCAGTT 174 || || || || | || | |||| || || || | | || | Sbjct 1083 ACCCGAGCAAAAGAGCCCAGGCTTCCATCTAGAACTAGGCGCCCGCGAGGACGGCTAGGT 1024 Query 175 CCG-CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 | | |||| | ||||||||| ||| || |||||||||||||||| || | || Sbjct 1023 GCTACATCATGGTATAAGTAAAACAACATTAGAAGTAGTGGTATTTCACTGACGGCAAAG 964 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| Sbjct 963 C--CTCCCACTTATTCTACACCTCCTAAGTCATTTCACAACGTCAGACTAGAGTCAAGCT 906 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 905 CAACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGC 846 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 845 TAGACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAG 786 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 785 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 726 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 725 TGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 666 >seq1513 Length=1234 Score = 587 bits (650), Expect = 2e-165 Identities = 457/540 (85%), Gaps = 16/540 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 1202 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 1143 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || | | Sbjct 1142 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTT 1083 Query 127 GGCCCGCG----AAGGAC---CTTAACGCCAGAAAATGGT-----CGGTGAAGACCAGTT 174 |||| | ||| | ||| | |||| || || || | | || | Sbjct 1082 A-CCCGAGCAAAAAGCCCAGGCTTCCATCTAGAACTAGGCGCCCGCGAGGACGGCTAGGT 1024 Query 175 CCG-CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 | | |||| | ||||||||| ||| || |||||||||||||||| || | || Sbjct 1023 GCTACATCATGGTATAAGTAAAACAACATTAGAAGTAGTGGTATTTCACTGTCGGCAAAG 964 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| Sbjct 963 C--CTCCCACTTATTCTACACCTCCTAAGTCATTTCACAACGTCAGACTAGAGTCAAGCT 906 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 905 CAACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGC 846 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 845 TAGACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAG 786 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 785 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 726 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 725 TGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 666 >seq6927 Length=1393 Score = 554 bits (614), Expect = 1e-155 Identities = 437/527 (83%), Gaps = 39/527 (7%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 669 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 610 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||| | | ||| || Sbjct 609 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCANAT--------CTAGAACTAGGC-- 560 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||| | ||| | | |||| | | |||| | Sbjct 559 -GCCCGCGAGG-------ACGGC---------TAGGTG----------CTACATCATGGT 527 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||| ||| || |||||||||||||||| || | || | |||||||||| Sbjct 526 ATAAGTAAAACAACATTAGAAGTAGTGGTATTTCACTGACGGCAAAGC--CTCCCACTTA 469 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 468 TTCTACACCTCCTAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTC 409 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| Sbjct 408 TTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATA 349 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 348 GGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATT 289 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 288 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCT 229 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 228 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 182 >seq914 Length=9049 Score = 506 bits (560), Expect = 7e-141 Identities = 325/354 (92%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 |||| | ||||||||| ||| || |||||||||||||||| || | || | ||| Sbjct 7905 TCATGGTATAAGTAAAACAACATTAGAAGTAGTGGTATTTCACTGTCGGCAAAGC--CTC 7962 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| Sbjct 7963 CCACTTATTCTACACCTCCTAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAG 8022 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| | Sbjct 8023 GGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACA 8082 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 8083 GTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACG 8142 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8143 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 8202 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 8203 AATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 8256 Score = 127 bits (140), Expect = 7e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 33 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 92 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||||||||||||||||||||||||||||||||| Sbjct 93 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635005394848