Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq953 178 4e-42 >seq953 Length=31761 Score = 178 bits (196), Expect = 4e-42 Identities = 335/491 (68%), Gaps = 34/491 (7%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 6512 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 6570 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| ||| | | | |||||||| Sbjct 6571 TACAATGTCT---------ATTTTTAAA-AATATTAGTTATTTATTTTAATAAGAGTGGT 6620 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCA-TAGTCTCCCACCTATCC 253 ||||||| | | | |||| |||||||| | | | || | |||||| ||| | Sbjct 6621 ATTTCAAGAGCATTTAAACAATTTACTAGCGTAAAGGTCTAAGTAAT-TCCCACTTATGC 6679 Query 254 TACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCG 312 |||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| || Sbjct 6680 TACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCG 6739 Query 313 TCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGA 372 || | ||| ||||||| || || | ||| ||||| | | || | | || Sbjct 6740 TCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGA 6799 Query 373 GACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 432 |||||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 6800 GACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTC 6859 Query 433 GCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTC 492 |||||||||||| || | |||||| ||||||||||||||| ||| ||| || | Sbjct 6860 GCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTTCATTCAATGCTTA 6919 Query 493 ACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGT 552 | || |||| |||| |||||||||||||||||| ||||| Sbjct 6920 A-------------------ACATTTCCTATTAATCTTCCAGCACCGGGCAGGTGTCAGA 6960 Query 553 CCGTATACCTC 563 || ||||| || Sbjct 6961 CCCTATACATC 6971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702197397376