Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10474 493 4e-137 seq5795 237 5e-60 >seq10474 Length=1557 Score = 493 bits (546), Expect = 4e-137 Identities = 425/516 (82%), Gaps = 20/516 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 593 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 535 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 534 TCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 475 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 474 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGT 415 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||||| |||| |||||||||||||| | | || ||||| || Sbjct 414 AGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATTTATCGC--GC 357 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--GGC 294 ||| ||||| || |||||||||| ||| || | | | ||||||| || Sbjct 356 AAAAG----CGCGATCCGCACAGTTATTATGCCTCAACACAATACCAGCCCGAAGACTGC 301 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGT 349 |||| ||| ||||||||||| | ||| |||| ||| ||| || |||||| Sbjct 300 ATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTCATGCATGT 242 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| ||||||||||| |||||||||||||||| | || || ||||| Sbjct 241 ATTAGCTCTAGAATTACTACGGTTATCCAAGTAGTAAGGTACTATCGAGTAGACTATAAC 182 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATG 468 |||| ||||||||||||||||||||||| ||| | | ||| ||||||||||||||||||| Sbjct 181 TGATATAATGAGCCATTCGCAGTTTCACAGTACAAATTTGTTTATACTTAGACATGCATG 122 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| ||||||||||||||| Sbjct 121 GCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 86 >seq5795 Length=7908 Score = 237 bits (262), Expect = 5e-60 Identities = 208/255 (82%), Gaps = 12/255 (5%) Strand=Plus/Plus Query 261 AGTTATTATGAATCACCA----AGGAGCCCCGA-AGGGCGTTGGTTTTTTATCTAATAAA 315 ||||||||||| ||| || | ||||| | | ||| ||||||| |||||||||| Sbjct 5989 AGTTATTATGACTCAACACAATACCAGCCCGAATACGGCATTGGTTTCG-ATCTAATAAA 6047 Query 316 TACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACG 370 | | ||| |||| ||| ||| || ||||||||||||||||||||||| ||| Sbjct 6048 TGCTACCCGCCCGACAAGCAGTTGGGTATTCATGCATGTATTAGCTCTAGAATTACTACG 6107 Query 371 GTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 |||||||| |||||||||||||||| | || || ||||||||| |||||||||||||||| Sbjct 6108 GTTATCCAAGTAGTAAGGTACTATCGAGTAGACTATAACTGATATAATGAGCCATTCGCA 6167 Query 431 GTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 ||||||| ||| | |||| |||||||| |||| ||||||||||||||||||||||||| Sbjct 6168 GTTTCACAGTACAAAATTGTTTATACTTCGACACGCATGGCTTAATCTTTGAGACAAGCG 6227 Query 490 TATGACTACTGGCAG 504 ||||||||||||||| Sbjct 6228 TATGACTACTGGCAG 6242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510220247296