Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_007189.1 Length=6907 Score E Sequences producing significant alignments: (Bits) Value seq11843 625 1e-175 seq2663 347 5e-92 >seq11843 Length=1551 Score = 625 bits (692), Expect = 1e-175 Identities = 398/428 (93%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 1565 CCCTACCCCCTCTCCCCAAGCCCCAAGAGGACCCGCCAGCGGTCTTGGGGAGCGGCTGGC 1624 ||||||||| ||||||||||||||||| |||||||||||| ||||||| || | |||| Sbjct 1129 CCCTACCCC---TCCCCAAGCCCCAAGAGAACCCGCCAGCGGCCTTGGGGTGCCGGTGGC 1185 Query 1625 GGG-AGTGCCAAGGATTCCTCGACACCGGGGCGAACTTTAAAGTACCCCTGTACACCCCT 1683 ||| |||| |||||||||||||| ||||||| ||||| |||||||||| ||||||||||| Sbjct 1186 GGGGAGTGTCAAGGATTCCTCGATACCGGGGTGAACTGTAAAGTACCC-TGTACACCCCT 1244 Query 1684 GTCAAGTAGGTATCGAAAATGAGCGCCAGCTACGACCTGTTCTGCCGGTGGAAGCACGTG 1743 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1245 GTCAAGTAG-TATCGACAATGAGCGCCAGCTACGACCTGTTCTGCCGGTGGAAGCACGTG 1303 Query 1744 CAGAAGATCCAGAGCGACAACGCTGGTGCGCTGGCATTGGGCGTGTCCAGGGCCACCGTT 1803 |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| Sbjct 1304 CAGAAGATCCAGAGCGACAACGCTGGTGCGCTGGCATTGGGCGTGTCCCGCGCGACCGTT 1363 Query 1804 TCCCTCTGGAAACAAGGGAAAAACGCGAAAATCCACTACATCGAGCGGATGGCCGTGGAC 1863 |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 1364 TCCCTCTGGAAACAAGGGAAAAACGCAGAAATCCACTACATCGAGCGGATGGCGGTGGAC 1423 Query 1864 ATTGGTGACAGCCCGGAAATGTGGTCGGCTGTCGTGATGGCTGAGCGGAGCAATTCCGAG 1923 ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1424 ATTGGCGACAGCCCCGAAATGTGGTCGGCTGTCGTGATGGCCGAGCGGAGCAATTCCGAG 1483 Query 1924 GACGAGAAGGCCGCATGGCGCCGAATTGCGCAAAAACTCGCCACGGTGGTCATGGCGCTA 1983 ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 1484 GACGAAAAGGCCGCATGGCGCCGAATTGCGCAGAAACTCGCCACGGTGGCTATGGCGCTA 1543 Query 1984 TGCCTGTT 1991 ||||| || Sbjct 1544 TGCCTCTT 1551 >seq2663 Length=1053 Score = 347 bits (384), Expect = 5e-92 Identities = 410/550 (75%), Gaps = 9/550 (2%) Strand=Plus/Plus Query 2419 ATCGTCCTGCCACTGTCGTCAATCTGCGGGACGTGGTGAGCCGGCGCAAACAGCGGTCGG 2478 ||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| Sbjct 37 ATCATCCTGCCACTGTCGTCAATCTGCGGGACGTTGTGAGCCAGCGCAAACAGCGTTCGG 96 Query 2479 CGGTGGCGATGGCTGGCCCTGACGCCGAGCCACCAGCGGTAGACCTGCCGATACTGGGGC 2538 |||||||||||||||||||||||||||| ||| || || |||||| ||| ||||| Sbjct 97 CGGTGGCGATGGCTGGCCCTGACGCCGATCCAGTGACGTCAGTCCTGCCAGTACAGGGGC 156 Query 2539 CCATGCCTCGCCAGCGCGTGTGAGGCGCTTCCGTAGGGGCGCTGCCCCTACACCCCGGAT 2598 | | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 157 CGAGGCCTCGCCAGCGCGTGTGAGGCGTTTCCGTAGGGGCGCTGCCCCTACACCCCGG-T 215 Query 2599 CACTGCTCCCGACAGCGTAACCATCCGCCAGAGCGCGAGGACACCTGTTCCCACCCGTTT 2658 |||||||| || ||||| ||| || || | | |||| || ||||||||||| ||||| Sbjct 216 CACTGCTCGCGGCAGCGCTGCCAGCCACCTGCGGGCGAAGAAACCTGTTCCCATCCGTTG 275 Query 2659 GGCAGCCTACGCATCGCCTGACCGCCAATGCACGCCATTCCTGAGCGCTTCGCTGCATCA 2718 || ||| | || | ||||| ||||| || || || | ||| |||||||| | || || Sbjct 276 GGGAGCTTTCGGAAGGCCTGGCCGCCGATACAGGCGAGTCCAGAGCGCTTAGAAGCTTCG 335 Query 2719 GTACCCATCGCAGGTAGCGTCACCAC---CTCGGTAGATGGACTTGGGCGTCCCGCCTGC 2775 | || | || ||| ||| || || ||| || |||| ||||| || ||| | Sbjct 336 GACCCGAGCGAAGGAAGCCCGACGACACTATCG---GAAGGACCAGGGCGACCGGCCCGG 392 Query 2776 CTGGACTCCTGCTG-TAGTGCATTGGCCTCAAGCCCATCACAGAGCGGTTTCATGCCCGG 2834 | | || | ||| || | ||| || || || ||| || || | |||||| Sbjct 393 C-GCGCTTCATCTGAAAGCACGCGGGCTTCGAGATGCTCGCAGTACGCCTTTACGCCCGG 451 Query 2835 ATGAGGATGGTTCGGCCAGCGGTACTGTTCACAATTGAATGGCGTTGTCGTCTTCGCCAT 2894 ||| || |||||||||||| | | | |||||| | ||||| || ||||| | ||| Sbjct 452 ATGTGGGTGGTTCGGCCAGGCCAATTCGTGACAATTAAGCGGCGTGGTGGTCTTTGACAT 511 Query 2895 CGAGTTATACGCGGCCTTGGGCGCTGCCGGAATTGGCTTTGGCGCTGGCCCCCTCGCTGA 2954 |||||| || || | ||| || || || || | ||||| ||| ||| || | || || Sbjct 512 CGAGTTGTAAGCAGGCTTTGGGGCCGCTGGGAGCGGCTTCGGCCTTGGACCGGTAGCCGA 571 Query 2955 ATGAATCTGC 2964 || | |||| Sbjct 572 CTGCAGCTGC 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21984256216244