Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq10041 93.3 2e-13 seq9630 84.2 9e-11 >seq10041 Length=29974 Score = 93.3 bits (102), Expect = 2e-13 Identities = 169/243 (70%), Gaps = 17/243 (7%) Strand=Plus/Minus Query 222466 ATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAG 222525 ||| | ||||||||||||||| | ||||||||| |||| | | | | || ||| Sbjct 1515 ATCCTGCACCGCGACCTCAAGAGCCCCAACCTGCTGGTGGACAAGAACTTCAACATCAAG 1456 Query 222526 GTGGCCGACTTTGGGTTCGCGCGGATCAAGGAAACCAACGCC---ACCATGACACGG--- 222579 | | ||||| || | ||| || |||||| | ||| |||||||| ||| Sbjct 1455 CTCTCGGACTTCGGCCTGGCGAGGGTCAAGG---CGCACGTGCAGACCATGAC-CGGCAA 1400 Query 222580 -TGCGGCACGCCGTACTGGACGGCACCCGAGATCAT---CACCCAAGAGCGCTACACCGA 222635 ||||||||| | | |||| ||| |||||| | | || ||| || ||||| || Sbjct 1399 CTGCGGCACGGTGCAGTGGATGGCGCCCGAGGTGCTGGGCAACCAGAAG---TACACGGA 1343 Query 222636 GAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCC 222695 |||||| ||||| | ||||||||||||| | || |||||| || | |||||| || |||| Sbjct 1342 GAAGGCGGACGTGTTCTCGTTCGGCATCGTGATCTGGGAGATCGTGACGGGCGAGTGTCC 1283 Query 222696 CTA 222698 || Sbjct 1282 GTA 1280 >seq9630 Length=2692 Score = 84.2 bits (92), Expect = 9e-11 Identities = 167/243 (69%), Gaps = 17/243 (7%) Strand=Plus/Minus Query 222466 ATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATGAAG 222525 ||| | ||||||||||||||| | ||||||||| |||| | | | | || ||| Sbjct 849 ATCCTGCACCGCGACCTCAAGAGCCCCAACCTGCTGGTGGACAAGAACTTCAACATCAAG 790 Query 222526 GTGGCCGACTTTGGGTTCGCGCGGATCAAGGAAACCAACG---CCACCATGACACGG--- 222579 | | ||||| || | ||| | |||||| | ||| |||||||| ||| Sbjct 789 CTCTCGGACTTCGGCCTGGCGAGAGTCAAGG---CGCACGTGCAGACCATGAC-CGGCAA 734 Query 222580 -TGCGGCACGCCGTACTGGACGGCACCCGAGATCAT---CACCCAAGAGCGCTACACCGA 222635 ||||||||| | | |||| ||| || ||| | | || ||| || ||||| || Sbjct 733 CTGCGGCACGGTGCAGTGGATGGCGCCGGAGGTGCTGGGCAACCAGAAG---TACACGGA 677 Query 222636 GAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGGCAAGCGTCC 222695 |||||| ||||| | ||||||||||||| | || |||||| || | |||||| || |||| Sbjct 676 GAAGGCGGACGTGTTCTCGTTCGGCATCGTGATCTGGGAGATCGTGACGGGCGAGTGTCC 617 Query 222696 CTA 222698 || Sbjct 616 GTA 614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084413562433998