Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2498 109 3e-22 seq1201 73.4 2e-11 >seq2498 Length=10311 Score = 109 bits (120), Expect = 3e-22 Identities = 96/119 (81%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA--AATGATAACATCGC 58 ||||||||||||||||||||||| || ||||| || |||| || | ||| | Sbjct 8310 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAGGTAAACGACTG 8251 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 8250 CCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 8192 >seq1201 Length=11070 Score = 73.4 bits (80), Expect = 2e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 68 AGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 6872 AGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 6921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278388740460