Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2498 228 1e-57 seq1201 199 7e-49 >seq2498 Length=10311 Score = 228 bits (252), Expect = 1e-57 Identities = 203/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 7943 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 8002 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| || | || | |||||||||||||||| | ||| |||||| Sbjct 8003 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGTAATG 8061 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 8062 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCG 8121 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 8122 CTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 8180 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 8181 AAGTTAGGGG 8190 >seq1201 Length=11070 Score = 199 bits (220), Expect = 7e-49 Identities = 198/251 (79%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAAT-TAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGC 128 |||||| |||||||| |||| |||| |||| |||| ||||||| |||||||||||| Sbjct 7171 TTTACTGTGAAAAAAAATAGAATGTTTAAAGTAGGCGTTTGCTCATTTGAATACATTAGC 7112 Query 129 ATGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||| || | || | |||||||||||||||| | ||| ||||| Sbjct 7111 ATGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGTAAT 7053 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 7052 GATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATC 6993 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | |||| | || |||||||| || |||||||||||||||| |||||| |||| Sbjct 6992 GCTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCACTAATCA-AGAACA 6934 Query 308 AAAGTTAGGGG 318 ||||||||||| Sbjct 6933 AAAGTTAGGGG 6923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915160518272