Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2498 244 4e-62 >seq2498 Length=10311 Score = 244 bits (270), Expect = 4e-62 Identities = 241/316 (76%), Gaps = 38/316 (12%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 296 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 355 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGTGA 507 ||||| ||||| ||||||||| || || |||| |||| | || Sbjct 356 AACCCCAGCGCGAAATGAAAGTAAAGGGCAGCGCAAGTTGTCTGAGGTAGGAAACGTTGC 415 Query 508 GGGT----------------GCACCATCGACCGATCCTGATGTCTTCG----GATGGATT 547 ||| |||| ||||||||||| ||| ||||| || |||| Sbjct 416 GGGCTTCGGTCTGCGGCGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATT 474 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 475 TGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAA 534 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||||||||| Sbjct 535 GCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAAC 594 Query 668 TTGGGTATAGGGGCGA 683 |||||||||||||||| Sbjct 595 TTGGGTATAGGGGCGA 610 Score = 181 bits (200), Expect = 4e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 10086 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 10145 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 10146 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 10205 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 10206 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 10245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079907464700