Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq267 149 2e-33 >seq267 Length=38185 Score = 149 bits (164), Expect = 2e-33 Identities = 312/454 (69%), Gaps = 16/454 (4%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 8611 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 8552 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 8551 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 8492 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC-CTCAAGTAT 212 || |||||| || |||||||||| || ||||| ||||| | |||| || | || || Sbjct 8491 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAAAT 8432 Query 213 CACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTG 272 | | ||||||||||||| | |||||||||| || |||||| || ||| Sbjct 8431 CTTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGGT-ATAAAAACTTACTGAATTCTTG 8373 Query 273 CAAACTCCGAATGCGCATCA--GT--TTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGT 328 ||||||||||| | | | || |||| || || | || |||||||| Sbjct 8372 GAAACTCCGAATACAAAAAAACGTAATTTA----AATAGACAGACATTAGGCGCTAAGGT 8317 Query 329 CCGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAA 386 | | | ||||| || | || || | ||| ||||||| | | |||| | | |||| Sbjct 8316 CTTTTGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAA 8258 Query 387 GTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATT 446 || ||| || ||||| | | ||| | || | || |||||||||||||||| | Sbjct 8257 GTGAAA--AAGGAAGTGAAAAAATGATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-T 8201 Query 447 CATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 | |||||||| |||||| |||||| | ||| || Sbjct 8200 CCTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 8167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689527110656