Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1546 228 1e-57 seq1327 199 7e-49 >seq1546 Length=12285 Score = 228 bits (252), Expect = 1e-57 Identities = 203/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 9979 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 9920 Query 130 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| || | || | |||||||||||||||| | ||| |||||| Sbjct 9919 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGTAATG 9861 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 9860 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCG 9801 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 9800 CTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 9742 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 9741 AAGTTAGGGG 9732 >seq1327 Length=10524 Score = 199 bits (220), Expect = 7e-49 Identities = 198/251 (79%), Gaps = 8/251 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAAT-TAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGC 128 |||||| |||||||| |||| |||| |||| |||| ||||||| |||||||||||| Sbjct 3910 TTTACTGTGAAAAAAAATAGAATGTTTAAAGTAGGCGTTTGCTCATTTGAATACATTAGC 3969 Query 129 ATGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||||||||||| ||| || | || | |||||||||||||||| | ||| ||||| Sbjct 3970 ATGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCAC-ACCAGGGTAAT 4028 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 4029 GATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATC 4088 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 | |||| | || |||||||| || |||||||||||||||| |||||| |||| Sbjct 4089 GCTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCACTAATCA-AGAACA 4147 Query 308 AAAGTTAGGGG 318 ||||||||||| Sbjct 4148 AAAGTTAGGGG 4158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915144850048