Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1546 244 4e-62 >seq1546 Length=12285 Score = 244 bits (270), Expect = 4e-62 Identities = 241/316 (76%), Gaps = 38/316 (12%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 7288 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 7229 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGTGA 507 ||||| ||||| ||||||||| || || |||| |||| | || Sbjct 7228 AACCCCAGCGCGAAATGAAAGTAAAGGGCAGCGCAAGTTGTCTGAGGTAGGAAACGTTGC 7169 Query 508 GGGT----------------GCACCATCGACCGATCCTGATGTCTTCG----GATGGATT 547 ||| |||| ||||||||||| ||| ||||| || |||| Sbjct 7168 GGGCTTCGGTCTGCGGCGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATT 7110 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 7109 TGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAA 7050 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||||||||| Sbjct 7049 GCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAAC 6990 Query 668 TTGGGTATAGGGGCGA 683 |||||||||||||||| Sbjct 6989 TTGGGTATAGGGGCGA 6974 Score = 181 bits (200), Expect = 4e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 7836 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 7777 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 7776 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 7717 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 7716 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 7677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079870742300