Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq241 253 6e-65 >seq241 Length=38274 Score = 253 bits (280), Expect = 6e-65 Identities = 359/499 (72%), Gaps = 37/499 (7%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1139 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 1198 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||| ||||| || | | | | | Sbjct 1199 TAATTCGATAATACGCGCAGAACCTTACCAACTCTTG-------CTAA----TTTTTATA 1247 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 || | || | | | ||||||| ||||||| ||||||||||||||| Sbjct 1248 TAAAATCTTATAT--------AAAAA---ACAGGTGTTGCATGGCTGTCGTCAGCTCGTG 1296 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCA--TC 244 | |||| ||||| |||||| ||| |||||||||||||| || |||||||| | | Sbjct 1297 TTGTGAAATGTTTGGTTAAATCCTTTAACGAGCGCAACCCCTATCGTTAGTTGCTAATTT 1356 Query 245 ATTA-----AGTTGG--GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 |||| || | | ||||||| | ||||| |||||||||| Sbjct 1357 ATTATAAATAGATAAAAGTACTCTAACGAAAAAATTAATGACAGGTTAATGGAAGGTGGG 1416 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| || ||||| ||||||||| ||||||||||||||||||||||| || || Sbjct 1417 GATGACGTCAAGTCTTCATGGCCCTTATGAGTTGGGCTACACACGTGCTACAAT-GATAA 1475 Query 358 T-ACAAAGGGCAGCGAAACCG---CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTT 413 | |||| | | ||| | | | || | ||||||| | |||| | ||| |||| Sbjct 1476 TCACAATGAGAAGCAATAATGATAGAAGTTGGAGCAAAT-CTTTAAAAATTATCTTAGTT 1534 Query 414 CGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC 473 |||||| | ||| |||||| | ||||||| |||||||||||||||||| ||| |||| Sbjct 1535 CGGATTAAGGACTGAAACTCGTCCTTATGAAGTTGGAATCGCTAGTAATCGCAGAACAGC 1594 Query 474 ATGCTACGGTGAATACGTT 492 ||||| ||||||||| ||| Sbjct 1595 ATGCTGCGGTGAATATGTT 1613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503909368960