Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015-
10-14] 6,026 sequences; 54,902,777 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq1546 381 1e-103
seq1513 93.3 7e-17
>seq1546
Length=12285
Score = 381 bits (422), Expect = 1e-103
Identities = 243/264 (92%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4816 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 4875
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||| || ||| |||| ||||| |||||||||||||||||
Sbjct 4876 TTAGTGGGTGAACAATCCAACAATTGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGA 4935
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4936 CATCGAAGAATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCC 4995
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
||||||||||||||||| |||||||||| | ||||| | | |||||||||||||||||
Sbjct 4996 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATTCTAAAGAACTAAAGGATCGATAGG 5055
Query 271 CCACACTTTCATGGTTTGTATTCA 294
|||| |||||| ||||||||||||
Sbjct 5056 CCACGCTTTCACGGTTTGTATTCA 5079
>seq1513
Length=12936
Score = 93.3 bits (102), Expect = 7e-17
Identities = 120/162 (74%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 34 TCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTA 93
|||||||||||| | ||||||||||| ||||| | |||||||||||| || ||||||
Sbjct 9034 TCAGTAGGGTAAGATTAACCTGTCTCGCGACGG-CCGAACCCAGCTCACATTTTCTATTA 8976
Query 94 GTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153
|| ||| | |||| || | | |||| ||| |||||| ||| |||||||
Sbjct 8975 AATGGATAAC-ACACAACAATTGGCTAGTTCTACTTTACAATGATATTGAGAACCGACAT 8917
Query 154 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195
|||| ||| |||| ||||||||||| | |||||| ||||
Sbjct 8916 TGAAGAATC--AAAGTAACGTCGCTATAGAAGCTTGGGTGCC 8877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854348513856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |