Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1546 381 1e-103 seq1513 93.3 7e-17 >seq1546 Length=12285 Score = 381 bits (422), Expect = 1e-103 Identities = 243/264 (92%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4816 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 4875 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || ||| |||| ||||| ||||||||||||||||| Sbjct 4876 TTAGTGGGTGAACAATCCAACAATTGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGA 4935 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 4936 CATCGAAGAATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCC 4995 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| | ||||| | | ||||||||||||||||| Sbjct 4996 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATTCTAAAGAACTAAAGGATCGATAGG 5055 Query 271 CCACACTTTCATGGTTTGTATTCA 294 |||| |||||| |||||||||||| Sbjct 5056 CCACGCTTTCACGGTTTGTATTCA 5079 >seq1513 Length=12936 Score = 93.3 bits (102), Expect = 7e-17 Identities = 120/162 (74%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 34 TCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTA 93 |||||||||||| | ||||||||||| ||||| | |||||||||||| || |||||| Sbjct 9034 TCAGTAGGGTAAGATTAACCTGTCTCGCGACGG-CCGAACCCAGCTCACATTTTCTATTA 8976 Query 94 GTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153 || ||| | |||| || | | |||| ||| |||||| ||| ||||||| Sbjct 8975 AATGGATAAC-ACACAACAATTGGCTAGTTCTACTTTACAATGATATTGAGAACCGACAT 8917 Query 154 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195 |||| ||| |||| ||||||||||| | |||||| |||| Sbjct 8916 TGAAGAATC--AAAGTAACGTCGCTATAGAAGCTTGGGTGCC 8877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854348513856