Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1546 136 4e-30 seq1327 116 4e-24 >seq1546 Length=12285 Score = 136 bits (150), Expect = 4e-30 Identities = 140/179 (78%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||| || Sbjct 9979 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 9920 Query 69 TGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||| || | || | |||||||||| ||||| | ||| ||||| Sbjct 9919 TGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCA-CACC-AGGGTAAT 9862 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| ||| ||| |||||| | |||| | |||| ||||||||||||||||| Sbjct 9861 GATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGAT 9803 >seq1327 Length=10524 Score = 116 bits (128), Expect = 4e-24 Identities = 136/180 (76%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAAT-TAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACC 67 |||||| |||||||| |||| ||| |||| |||| ||||||| |||||||||| | Sbjct 3910 TTTACTGTGAAAAAAAATAGAATGTTTAAAGTAGGCGTTTGCTCATTTGAATACATTAGC 3969 Query 68 ATGGAATAATAGAATA-GGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 ||||||||||| ||| || | || | |||||||||| ||||| | | | |||| Sbjct 3970 ATGGAATAATAAGATACGGCCTTGGTGGTCTATTTTGTTGGTTTGCACACCAGG--GTAA 4027 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| |||| ||| ||| |||||| | |||| | |||| ||||||||||||||||| Sbjct 4028 TGATTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGAT 4087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511970111040