Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq241 226 9e-57 >seq241 Length=38274 Score = 226 bits (250), Expect = 9e-57 Identities = 257/337 (76%), Gaps = 7/337 (2%) Strand=Plus/Plus Query 167 GATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||| | ||||||||| ||| | ||||||| | | ||| |||| | ||| | Sbjct 513 GATTAAGGTAGTTGGTAGTTTAATAGACTACCAAGCCTATTATCTTTAGCTGGTTTGAAA 572 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | |||||||||||| Sbjct 573 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGG 631 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-C 344 ||||| ||| |||||| || |||| |||| |||||| ||| ||||| || || ||| Sbjct 632 GGAATTTTGGACAATGAGCGGAAGCTTGATCCAGCAATACCGAGTGAGTGAAGACGGCTA 691 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | ||| |||||||||| || | ||||| || |||||| |||||| | | |||| || Sbjct 692 ATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAAGTTCC 751 Query 405 GGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||| || |||||||||||||||||||||||| || || ||| |||| |||||| Sbjct 752 GGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAATG 810 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | |||||||||||| ||||||||||| |||||| Sbjct 811 A-TTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGT 846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497509754624