Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1546 594 2e-167 seq5621 228 3e-57 >seq1546 Length=12285 Score = 594 bits (658), Expect = 2e-167 Identities = 458/538 (85%), Gaps = 13/538 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 5112 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 5171 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || | || Sbjct 5172 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTC 5231 Query 127 GGCCCG-CGAAGGACC----TTAACGCCAGAAAATGGTCG--GTGAAGAC---CAGTTCC 176 || | || | || ||| | |||| || | | || | | ||| | | Sbjct 5232 ACCCAAACAAAAGTCCAGGCTTACAACTAGAACTGGGCCACCGCGAGGCCACCCAGATGC 5291 Query 177 G-CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 | |||| | ||||||||| ||| | || ||||||||||||||| || | | | Sbjct 5292 TACATCATGGTATAAGTAAAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC- 5350 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 5351 -CTCCCACTTATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCA 5409 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 5410 ACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTA 5469 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 5470 GACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGAT 5529 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5530 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 5589 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5590 GTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 5647 >seq5621 Length=1126 Score = 228 bits (252), Expect = 3e-57 Identities = 173/203 (85%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 178 CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGC 237 |||||| | ||||||||| ||| | || ||| ||||||||||| || | | | | Sbjct 985 CTTCATGGTATAAGTAAAACAACATTGAGAGTAATGGTATTTCACGATCGACAGAGC--C 928 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||||| Sbjct 927 TCCCACTTATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAACTCAAC 868 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||||||||||| |||| ||| ||||||||| ||||| ||||||||| Sbjct 867 AGGGTCTTCTTTCCCCGCTGATTATTCCAAACCCATTCCCTTGGATGTGGGTTCGCTAGA 808 Query 358 TAGTAGATAGGGACAGTGGGAAT 380 |||||||||||||||||||||| Sbjct 807 CAGTAGATAGGGACAGTGGGAAT 785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635101462848