Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1546 489 5e-136 >seq1546 Length=12285 Score = 489 bits (542), Expect = 5e-136 Identities = 424/516 (82%), Gaps = 20/516 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 10215 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 10273 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 10274 TCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 10333 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 10334 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGT 10393 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||||| |||| |||||||||||||| | | || ||||| || Sbjct 10394 AGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATTTATCGC--GC 10451 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--GGC 294 ||| ||||| || ||||||||||| ||| || | | | ||||||| || Sbjct 10452 AAAAG----CGCGATCCGCACAGTTATTATGACTCAACACAATACCAGCCCGAAGACTGC 10507 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGT 349 |||| ||| ||||||||||| | ||| |||| ||| ||| || |||||| Sbjct 10508 ATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTCATGCATGT 10566 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| |||| |||||| |||||||||||||||| | || || ||||| Sbjct 10567 ATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTAGACTATAAC 10626 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATG 468 |||| ||||||||||||||||||||||| ||| | | || ||||||||||||||||||| Sbjct 10627 TGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATG 10686 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| ||||||||||||||| Sbjct 10687 GCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 10722 Score = 320 bits (354), Expect = 5e-85 Identities = 298/371 (80%), Gaps = 18/371 (5%) Strand=Plus/Plus Query 145 AACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGT 204 |||||||||||||||||||||||| || |||||||||||| |||||||||||| |||| Sbjct 2 AACCCTAATTCCCCGTTACCCGTTAATGCCATGGTAGGCCCATATCCTACCATCCAAAGC 61 Query 205 TGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTT 264 |||||||||||||| | | || ||||| || ||| ||||| || |||| Sbjct 62 TGATAGGGCAGAAACTCAATCGATTTATCGC--GCAAAAGC----GCGATCCGCACAGTT 115 Query 265 ATTATGAATCACCA-AGGAGC--CCCGAAGG--GCGTTGGTTTTTTATCTAATAAATACA 319 ||||||| ||| || | | | ||||||| || ||||||| ||||||||||| | Sbjct 116 ATTATGACTCAACACAATACCAGCCCGAAGACTGCATTGGTTTCA-ATCTAATAAATGCT 174 Query 320 CCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 ||| |||| ||| ||| || ||||||||||||||||||||||| |||| || Sbjct 175 ACCCGCCCGACAAGCAGTTGGGTATTCATGCATGTATTAGCTCTAGAATTACTACGGGTA 234 Query 375 TCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTT 434 |||| |||||||||||||||| | || || ||||||||| |||||||||||||||||||| Sbjct 235 TCCAAGTAGTAAGGTACTATCGAGTAGACTATAACTGATATAATGAGCCATTCGCAGTTT 294 Query 435 CACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 ||| ||| | | || ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 295 CACAGTACAAAAGTGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATG 354 Query 494 ACTACTGGCAG 504 ||||||||||| Sbjct 355 ACTACTGGCAG 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510308983296