Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314925.1_202015- 10-14] 6,026 sequences; 54,902,777 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq345 277 1e-69 seq14 219 3e-52 >seq345 Length=31688 Score = 277 bits (306), Expect = 1e-69 Identities = 1089/1689 (64%), Gaps = 53/1689 (3%) Strand=Plus/Minus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 ||||||||||| |||||||| || |||||| ||||| ||||| |||| | | || Sbjct 14033 TAGTACATGCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATGGATG-TGAGCTT 13975 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || | || |||| ||||| | ||| || || | |||||||||||| ||||||| | Sbjct 13974 GC-TGATCGTCGGGTCGGCAATATGGATGTTGAGCGACTGACTCTGGCAGATGTAAGCGC 13916 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTAC 65299 |||| || || | || || | | |||| || | |||||||| || ||||||||| Sbjct 13915 CACGGTCGGCTGACAGATCCAGCAC-CGACTTCTGCTTGATCTCCCACACCGTCTTGTAC 13857 Query 65300 AGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAAT 65358 | ||| | || || ||| | | ||| || || |||| | ||| || Sbjct 13856 TTGTCCTTTACGTTGTCCGGGATGACCTTGACCTTCTGCACAGACCCACCGTCGTTCAGG 13797 Query 65359 AATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTG 65418 | | | || || | | | ||| | |||| ||||| || | | | | || Sbjct 13796 A-TCTGGTTGCGAACCTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATTAGGT- 13739 Query 65419 ACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGT 65475 || ||| | || | | |||||| || | || ||||| ||| || ||||| || || Sbjct 13738 AC--TTGTTCACGATCGTGAACTCACCAGCAAGCACACGGCGGTTGTACATGTTCGATGT 13681 Query 65476 GATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGG 65535 | ||| || | ||| ||| ||||||| || || || ||||| || || || |||||||| Sbjct 13680 GTAGGGCTCGATGGACTCATTGTTGCCCAGGATCTGCGCAGTCGAAGCCGTAGGCATGGG 13621 Query 65536 AGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCA 65595 || |||| | ||||| || | |||| | || ||| | || | |||| Sbjct 13620 GGCCACCAGTAGCGAGTTACGGATACCGTGTTTGATAACGTTCTCCTTCAGCGCAGCCCA 13561 Query 65596 GTTCCACAT--CGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCG 65653 |||||||| ||| | || || | || |||||| || || | | | || Sbjct 13560 GTTCCACAGGCCGGACGA-CGGGGAGA----CGCCCCACATGTCGAACTGGAAGATACCC 13506 Query 65654 ATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAG 65713 |||| || || || || |||| | ||||| ||| ||||||||||| | | Sbjct 13505 TTACTAGCAGGCGAGCCCTGGAACGTCTCGTAAGGGCCCAGCTCCTTGGCAATCTCCATG 13446 Query 65714 CTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCC 65773 ||||| | || ||| | || ||||||||||||||| || || || || ||| Sbjct 13445 GACGTCTCCATTGACGCATAGTAGATGGTCTCGAAAATGTTCTTGTTCAGCTCGCGAGCC 13386 Query 65774 TCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCC 65832 | ||||| ||| ||| | || ||| |||| |||| |||||||||||| ||||| || Sbjct 13385 TGTTCGCTTTCGAACG-CGTAGTTCATGAGGATGAAAGCGTCGGCCAGACCCTGAACACC 13327 Query 65833 AATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATT 65892 |||||| | || || || |||| ||||| | ||||| || ||||| || || Sbjct 13326 AATACCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGCCTCCACGACTGGGTAATAGTT 13267 Query 65893 GATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC 65952 ||| ||||| | || | ||| || |||||||| | | |||||| | ||| Sbjct 13266 GATGTCGATCACCTTGTTGAGATTACGGGTCACCACCTTA--GTCACGTCGTAGAGCTTC 13209 Query 65953 GAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAG 66012 || | || | | | ||| | |||| || || || || || | Sbjct 13208 ----------TGGT-AG-----TTGAAAACTCCGTCCTCCACGAATTTAGGCAGTGCTAC 13165 Query 66013 AGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCA 66072 || || | |||||| || || | ||| || || | || ||||| | | ||| ||| Sbjct 13164 GGACGCCAAGTTGCACACCGCCACCTCATCCGGCGACGTGTACTCCATCACCTCGCAGCA 13105 Query 66073 CAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATC 66132 || |||||| |||| || |||||||||||||| || || |||||| ||| || || Sbjct 13104 CAAGTTACTGGAGCGGATCGTGCCCAAATTCTGCTGGTTGGACTTGCGGTTGGCCGCGTC 13045 Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 |||||||| |||| | || || ||||||| || | || | ||| | | ||| || Sbjct 13044 CTTGTACAGCATGAAGGGCACACCCGTCTCAATCTGCGCGTCCAAGATCGAGAACCACAG 12985 Query 66193 AGCGCGTGCCTTCACCGTA-----CGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAG 66247 |||| || | ||| || || |||| |||| ||||| | |||||| Sbjct 12984 CTGCTGTGCATTGATCGTCTTGCGCGCACGTCCCT-CCTTC----TCGTACTTCTCGTAG 12930 Query 66248 AGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATC 66307 || ||| || || ||||| ||| | || | ||| | | ||||| | | Sbjct 12929 AGAGTTTCAAACTCGTCTCCCCAGCACTCGTAGAGGCCAGGAGCTTCATTGGGACAGAAC 12870 Query 66308 AGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCG 66367 | ||| | |||| ||| || || ||| || |||||||| | ||| || ||| Sbjct 12869 AAACTCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCACAGAGCG 12810 Query 66368 TAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAAC 66427 ||||| | || || || || ||| ||| ||||||| || || || | ||| | |||| Sbjct 12809 TAGAACAAGTCACGAGCACGGTGCAACTCGTTGCCGTGGTTCTTACGTAGGTCCAAGAAC 12750 Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487 || |||| ||| |||||||| || |||| |||||| |||||||| || |||||||||| Sbjct 12749 TCGAAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCT 12690 Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 || || ||||| ||||| ||||| | ||| || || |||| ||| || | || || Sbjct 12689 CCGCCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCA 12630 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTATATCGTGAACATT 66606 || || ||| || ||||| |||| | | ||| | || || | ||| | | | Sbjct 12629 TTGGACGAGCCGTTCGTGCCTCGGATGTAAC-TGTTAGTGGCTCGGATGTTGTGCATACT 12571 Query 66607 CAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATAT 66666 | |||||||| || ||| || |||||| ||||| | || || | | || Sbjct 12570 GATGCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTGTCGTAGAT 12511 Query 66667 GCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGG 66726 ||| ||||||||||| ||| |||| ||| | | |||| || || || || || Sbjct 12510 GCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGG 12451 Query 66727 TGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATT 66786 ||| | || |||||| ||||| || || ||||| ||| | | | ||||| | | Sbjct 12450 AGTGCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGAACTTCTGCGACATCAACTC 12391 Query 66787 GTACGTCTC 66795 ||||||||| Sbjct 12390 GTACGTCTC 12382 >seq14 Length=111874 Score = 219 bits (242), Expect = 3e-52 Identities = 587/885 (66%), Gaps = 23/885 (3%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | |||||||| || | | || | |||| |||||||| ||||| || Sbjct 21339 CGCTTCGTGCTCTTCCCCATTCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAG 21398 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 ||||| || ||||||| |||||| | || || | ||| | || ||||||| | Sbjct 21399 GCTTCGTTTTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAAC 21458 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 | ||| | || | || ||| | || |||||| | || || || || || || Sbjct 21459 CTCTCGGACAACGAGCGTCACTTCGTCAAGCATGTGCTCGCCTTTTTCGCGGCCAGTGAT 21518 Query 61234 GGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 || ||||| || ||||| | || |||| ||| | || ||||| ||| | || Sbjct 21519 GGCATCGTAAACGAGAACCTGGCCAT--GAAC--TTCAGCAACGAAGTGCAGGTGCCCGA 21574 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 ||| || || ||||||||||||||||||||||| ||||| ||||||||||| | ||| Sbjct 21575 GGCTCGCTGCTTCTACGGCTTCCAGATTGCCATCGAGAACATCCACTCGGAGGTCTACTC 21634 Query 61350 TGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCA 61408 | ||||| || |||||||||| ||| || | | | || | ||| | ||||| Sbjct 21635 GCTGCTCATTGACACGTACATCAAGGACGCCATTGAGAAG-GACCACTTGCTGCGTGCCA 21693 Query 61409 TCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGT 61467 | ||||| || ||| |||| | |||||| | ||||| |||| ||| | ||| Sbjct 21694 TTGAGACCATCCCGTGCGTGACGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGACC--C 21751 Query 61468 AC-AACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTT 61526 || | | ||| || || ||||||| || || ||| ||||| | || || Sbjct 21752 ACGTGTGTCGTCATACCCGGAGCGTCTGCTGGCGTTCGCCTCGGTGGAGGGCATCTTCTT 21811 Query 61527 CAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586 | || || || | | ||||| ||| | ||||| || || || ||||| ||||| | Sbjct 21812 CTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTCAG 21871 Query 61587 CTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTG--TTTT 61643 |||| || ||| |||| || || ||||||||||| || || | ||| | | Sbjct 21872 CTTCTCGAACGAGCTGATCAGCCGTGATGAGGGCATGCACACGGACTTCGCCTGCCTCAT 21931 Query 61644 GCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCG 61703 | || || | | ||||| || | | ||||| |||||| |||||| || || Sbjct 21932 G-TACTC-----CAAGCTGGTCAACAAACTGCCGGAGAGCCGTGTGCATGAGATCGTGCG 21985 Query 61704 TGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGG 61763 ||| ||||| || || || || ||| || |||| | | || || || ||||| Sbjct 21986 TGACGCGGTGGTGATTGAGCACGAGTTTGTGTGTGACTCGCTCCCTGTGGAGCTGATCGG 22045 Query 61764 CATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 |||||| | || || |||| ||||| || || || || || ||||||||| || | Sbjct 22046 CATGAACTCGGGCCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCTGTACTC 22105 Query 61824 TTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTC 61883 ||||| || |||||| | || ||||| || || | ||||||||||| || Sbjct 22106 ACTGGGTGTGTCCAAGATCTACCACGTCAAGAACCCGTTCGACTGGATGGACATGATCTC 22165 Query 61884 GCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 || | |||||||| || ||||||||||| ||||| ||||| || Sbjct 22166 TCTCCAGGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 22210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397538801860640