Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq102494 170 3e-40 seq49339 170 3e-40 seq19580 170 3e-40 seq87400 127 3e-27 seq111800 111 2e-22 seq33935 111 2e-22 seq13547 111 2e-22 seq117265 105 1e-20 seq62786 84.2 3e-14 seq106601 78.8 1e-12 >seq102494 Length=4849 Score = 170 bits (188), Expect = 3e-40 Identities = 177/227 (78%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||||| |||| ||| || |||| ||||||| ||||||||| |||||| | Sbjct 3 GTACAAAGGACAGGGGCGTAACCAATGCAAGCT-GATGACTTGCGCTTACTGGGAATT-C 60 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || ||| || || | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 61 CTTGTTCAAAACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 120 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||||| ||||| | |||| ||||| |||||||||||||| ||||| Sbjct 121 -CCCAGACATGTCGATAAAGGTTGCATACTCATTGAACGCATCAGTGTAGCGCACGTGCT 179 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 | |||||||||||||||||||||||| | ||||| || ||||| Sbjct 180 ACTTAGAACATCTAAGGGCATCACAGACATTTTATTTTTTCTAACTT 226 >seq49339 Length=2477 Score = 170 bits (188), Expect = 3e-40 Identities = 177/227 (78%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||||| |||| ||| || |||| ||||||| ||||||||| |||||| | Sbjct 381 GTACAAAGGACAGGGGCGTAACCAATGCAAGCT-GATGACTTGCGCTTACTGGGAATT-C 438 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || ||| || || | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 439 CTTGTTCAAAACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 498 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||||| ||||| | |||| ||||| |||||||||||||| ||||| Sbjct 499 -CCCAGACATGTCGATAAAGGTTGCATACTCATTGAACGCATCAGTGTAGCGCACGTGCT 557 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 | |||||||||||||||||||||||| | ||||| || ||||| Sbjct 558 ACTTAGAACATCTAAGGGCATCACAGACATTTTATTTTTTCTAACTT 604 >seq19580 Length=743 Score = 170 bits (188), Expect = 3e-40 Identities = 177/227 (78%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||||| |||| ||| || |||| ||||||| ||||||||| |||||| | Sbjct 515 GTACAAAGGACAGGGGCGTAACCAATGCAAGCT-GATGACTTGCGCTTACTGGGAATT-C 458 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 || ||| || || | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 457 CTTGTTCAAAACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 398 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||||| ||||| | |||| ||||| |||||||||||||| ||||| Sbjct 397 -CCCAGACATGTCGATAAAGGTTGCATACTCATTGAACGCATCAGTGTAGCGCACGTGCT 339 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 | |||||||||||||||||||||||| | ||||| || ||||| Sbjct 338 ACTTAGAACATCTAAGGGCATCACAGACATTTTATTTTTTCTAACTT 292 >seq87400 Length=9637 Score = 127 bits (140), Expect = 3e-27 Identities = 133/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 34 TGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATC 93 |||||| | ||||||||| |||||| ||||||| ||||| | |||||||| ||||| Sbjct 4576 TGATGAGTTGCGCTTACTGGGAATT-CCTCGTTCAAGACTGAAAATTGCAACAGTCTATT 4518 Query 94 CCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGT 152 || | ||| ||| |||| || ||| ||| ||||||||| ||||| || |||| | Sbjct 4517 CCTAGCACAATGTGCATTCACAAAATTTCCCAGACCTGTCGATAAAGGTTGTATACTCAT 4458 Query 153 TGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 |||| |||||||||||||| ||||| | |||| |||||||| || ||||| Sbjct 4457 TGAACGCATCAGTGTAGCGCACGTGCTACTCAGATCATCTAAGCGCGTCACA 4406 >seq111800 Length=6919 Score = 111 bits (122), Expect = 2e-22 Identities = 61/61 (100%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4718 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 4659 Query 219 T 219 | Sbjct 4658 T 4658 >seq33935 Length=4156 Score = 111 bits (122), Expect = 2e-22 Identities = 61/61 (100%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2770 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 2829 Query 219 T 219 | Sbjct 2830 T 2830 >seq13547 Length=4163 Score = 111 bits (122), Expect = 2e-22 Identities = 61/61 (100%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2777 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 2836 Query 219 T 219 | Sbjct 2837 T 2837 >seq117265 Length=8370 Score = 105 bits (116), Expect = 1e-20 Identities = 100/124 (81%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 7 AGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTT 66 |||||||||||||| |||| || |||| ||||||| ||| |||||||||| ||| ||||| Sbjct 1579 AGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAA-TTCTTCGTT 1522 Query 67 GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGG 125 ||||| | |||||||| ||||||| | ||||||| |||| |||||||||| | Sbjct 1521 CAAGACTGAAAATTGCAACAGCCTATCCCTAGCACGATGCGCATTCACAAGATTACCCAG 1462 Query 126 ACCT 129 |||| Sbjct 1461 ACCT 1458 >seq62786 Length=2460 Score = 84.2 bits (92), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Minus Query 14 GGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACC 73 ||||||| |||| || |||| || ||| ||| |||||||||| ||||||||| |||||| Sbjct 1986 GGACGTAATCAATGCAAGCT-GACAACTTGCGTTTACTAGGAA-TTCCTCGTTCAAGACC 1929 Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTC 132 | || ||||| | |||||| | | | ||| | |||| | ||||| | ||||| || Sbjct 1928 GAAAAATGCAACAGTATATCCCTAGCTCCATGCGAATTCACATAATTACACAGACCTATC 1869 Query 133 GGCCAAGGTGATAGACTCGTTG 154 | |||||| | |||||||| Sbjct 1868 GATCAAGGTTGAATACTCGTTG 1847 >seq106601 Length=5494 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 ||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||| || Sbjct 1329 CATCAGTGTAGTGCCCGTGCGGCTCAGAATGTCTAAGGGCATCACAGACCTTTTATTTCC 1388 Query 219 T 219 | Sbjct 1389 T 1389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751136916910