Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq89053 113 8e-23 seq105739 95.1 2e-17 seq11913 91.5 3e-16 >seq89053 Length=5270 Score = 113 bits (124), Expect = 8e-23 Identities = 129/168 (77%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 84 AAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCATGGAATAATA 139 ||||| ||||||||| ||||||||| ||||||| ||||||||| |||||||||||| Sbjct 4994 AAAAAATAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTCGCATGGAATAATT 4935 Query 140 GAATAGGACGTGCG-GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGG 198 ||| | || | | ||| |||||||||||| | ||| ||||| |||||||| | Sbjct 4934 AGATACAGCCTGGGTGGTCTTTTTTGTTGGTTTGC-GCACCAGGGTAATTATTAATAGTG 4876 Query 199 ATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 | ||| ||| | ||| |||| | | |||||||||||||||||||| Sbjct 4875 ACAGTTGGGTAT-TCA-TATTTCAGCGGCAGAGGTGAAATTCTTGGAT 4830 >seq105739 Length=13849 Score = 95.1 bits (104), Expect = 2e-17 Identities = 63/70 (90%), Gaps = 4/70 (6%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 4673 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 4732 Query 130 TGGAATAATA 139 |||||||||| Sbjct 4733 TGGAATAATA 4742 >seq11913 Length=1468 Score = 91.5 bits (100), Expect = 3e-16 Identities = 85/104 (82%), Gaps = 7/104 (7%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| ||||||||| |||||||| ||||||||| ||||||| ||||||||| ||| Sbjct 387 TTTACTGTGAAAAAAT-AGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTGGCA 445 Query 130 TGGAATAATAGAATA-GGACG-TGCGGTTCTATTTTGTTGGTTT 171 |||||||| | ||| || || || | ||||||||||||| || Sbjct 446 TGGAATAAAAAGATACGGCCGTTGGTGGTCTATTTTGTTGGGTT 489 Score = 87.8 bits (96), Expect = 3e-15 Identities = 97/129 (75%), Gaps = 9/129 (7%) Strand=Plus/Plus Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 1177 TTAATAGGGACAGTTGGGGGTATTCATATTTCAGCGTCAGAGGTGAAATTCTTGGATCGC 1236 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | |||| || ||||||| |||||||||||||||||||| ||||||| Sbjct 1237 TGAAAGATGTGCTTAGGCGAAAG--------AAGGATGTTTTCATTAATCA-AGAACGAA 1287 Query 310 AGTTAGGGG 318 ||||||||| Sbjct 1288 AGTTAGGGG 1296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914115725952