Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq111800 232 1e-58 seq33935 232 1e-58 seq13547 232 1e-58 seq102494 217 2e-54 seq49339 217 2e-54 seq19580 217 2e-54 seq87400 174 3e-41 seq106601 75.2 2e-11 >seq111800 Length=6919 Score = 232 bits (256), Expect = 1e-58 Identities = 206/260 (79%), Gaps = 26/260 (10%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT- 74 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4716 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTG 4657 Query 75 ---------CAAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----A 118 | ||||||| |||| | | | |||| ||||||| ||||||| | | Sbjct 4656 TTATTGCCTCCAACTTCCTTTGGTTTCATTACCCAAAAGTCCCTGTAAGAAGTCCACAAA 4597 Query 119 GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | ||||| || ||| ||| | |||||||| | |||| || |||||| Sbjct 4596 CCTACCAAAAATGGTCAGCGGGACAATTTAGCACGCGGAGGT---------TAACGGAAT 4546 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||| Sbjct 4545 TAACCAGACAAATCACTCCACCAACTAAGAATGGTCATGCACCACCACCCATATAATCAA 4486 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 4485 GAAAGAGCTCTCAATCTGTC 4466 >seq33935 Length=4156 Score = 232 bits (256), Expect = 1e-58 Identities = 206/260 (79%), Gaps = 26/260 (10%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT- 74 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2772 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTG 2831 Query 75 ---------CAAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----A 118 | ||||||| |||| | | | |||| ||||||| ||||||| | | Sbjct 2832 TTATTGCCTCCAACTTCCTTTGGTTTCATTACCCAAAAGTCCCTGTAAGAAGTCCACAAA 2891 Query 119 GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | ||||| || ||| ||| | |||||||| | |||| || |||||| Sbjct 2892 CCTACCAAAAATGGTCAGCGGGACAATTTAGCACGCGGAGGT---------TAACGGAAT 2942 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||| Sbjct 2943 TAACCAGACAAATCACTCCACCAACTAAGAATGGTCATGCACCACCACCCATATAATCAA 3002 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 3003 GAAAGAGCTCTCAATCTGTC 3022 >seq13547 Length=4163 Score = 232 bits (256), Expect = 1e-58 Identities = 206/260 (79%), Gaps = 26/260 (10%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT- 74 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2779 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTG 2838 Query 75 ---------CAAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----A 118 | ||||||| |||| | | | |||| ||||||| ||||||| | | Sbjct 2839 TTATTGCCTCCAACTTCCTTTGGTTTCATTACCCAAAAGTCCCTGTAAGAAGTCCACAAA 2898 Query 119 GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | ||||| || ||| ||| | |||||||| | |||| || |||||| Sbjct 2899 CCTACCAAAAATGGTCAGCGGGACAATTTAGCACGCGGAGGT---------TAACGGAAT 2949 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||| Sbjct 2950 TAACCAGACAAATCACTCCACCAACTAAGAATGGTCATGCACCACCACCCATATAATCAA 3009 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 3010 GAAAGAGCTCTCAATCTGTC 3029 >seq102494 Length=4849 Score = 217 bits (240), Expect = 2e-54 Identities = 196/245 (80%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||| ||||| | |||||||||||||||||||||||| | ||||| || Sbjct 161 TCAGTGTAGCGCACGTGCTACTTAGAACATCTAAGGGCATCACAGACATTTTATTTTTTC 220 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 ||||| | |||| | || | |||| |||||| | || | | | || || || Sbjct 221 TAACTTGCTTTGGTTTGATTATCCAAACCTCCCTCCACAAACCTA----CAAATAATGGT 276 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 ||| ||||||||| | ||||||||||||||| ||||||| ||||||||||||| Sbjct 277 AAGCAGGGTTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTGACCAGACAAATCA 336 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 337 CTCCACCAACTTAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGATTTCAAT 396 Query 254 CTGTC 258 ||||| Sbjct 397 CTGTC 401 >seq49339 Length=2477 Score = 217 bits (240), Expect = 2e-54 Identities = 196/245 (80%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||| ||||| | |||||||||||||||||||||||| | ||||| || Sbjct 539 TCAGTGTAGCGCACGTGCTACTTAGAACATCTAAGGGCATCACAGACATTTTATTTTTTC 598 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 ||||| | |||| | || | |||| |||||| | || | | | || || || Sbjct 599 TAACTTGCTTTGGTTTGATTATCCAAACCTCCCTCCACAAACCTA----CAAATAATGGT 654 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 ||| ||||||||| | ||||||||||||||| ||||||| ||||||||||||| Sbjct 655 AAGCAGGGTTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTGACCAGACAAATCA 714 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 715 CTCCACCAACTTAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGATTTCAAT 774 Query 254 CTGTC 258 ||||| Sbjct 775 CTGTC 779 >seq19580 Length=743 Score = 217 bits (240), Expect = 2e-54 Identities = 196/245 (80%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||| ||||| | |||||||||||||||||||||||| | ||||| || Sbjct 357 TCAGTGTAGCGCACGTGCTACTTAGAACATCTAAGGGCATCACAGACATTTTATTTTTTC 298 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 ||||| | |||| | || | |||| |||||| | || | | | || || || Sbjct 297 TAACTTGCTTTGGTTTGATTATCCAAACCTCCCTCCACAAACCTA----CAAATAATGGT 242 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 ||| ||||||||| | ||||||||||||||| ||||||| ||||||||||||| Sbjct 241 AAGCAGGGTTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTGACCAGACAAATCA 182 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 181 CTCCACCAACTTAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGATTTCAAT 122 Query 254 CTGTC 258 ||||| Sbjct 121 CTGTC 117 >seq87400 Length=9637 Score = 174 bits (192), Expect = 3e-41 Identities = 160/200 (80%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC- 117 || |||||||| ||| ||||| | |||| | || | |||| ||||||||||||||| | Sbjct 3885 ACATGTTATTGTCTCTAACTTACTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCC 3826 Query 118 ---AGCCACCAACCATAGTCGAT-GGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATC 173 | || |||| | | | | |||| ||||||||| | |||| |||||||||| | Sbjct 3825 ACAAACCTCCAAATAATGACAAGCGGGGTTATTTAGCACGCGGAGGTTTCGTTCGTTAAC 3766 Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || Sbjct 3765 GGAATTGACCAGACAAATCACCCCACCAACAAAGAACGGCCATGCACCACCACCCATTGA 3706 Query 234 ATCAAGAAAGAGCTATCAAT 253 ||||||||| || | ||||| Sbjct 3705 ATCAAGAAATAGATTTCAAT 3686 >seq106601 Length=5494 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| || |||||||| ||||| |||||||||||||||||||| ||||| ||| Sbjct 1331 TCAGTGTAGTGCCCGTGCGGCTCAGAATGTCTAAGGGCATCACAGACCTTTTATTTCCT 1389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795885499194