Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10363 289 5e-76 seq109437 282 7e-74 seq111557 212 1e-52 seq117479 167 4e-39 seq99279 102 1e-19 >seq10363 Length=3111 Score = 289 bits (320), Expect = 5e-76 Identities = 207/238 (87%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 55 GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 |||||| ||||||||||||||| |||| |||||||||||||| || ||||||||||| | Sbjct 1996 GTCTCACGACGGTCTAAACCCAACTCATGTTCCCTATTAGTGTGTAAACAATCCAACAAT 2055 Query 115 TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGT 174 || ||| ||| ||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 2056 TAGCGAGCTCTACTTCGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGT 2115 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||||||| ||||||||||||||||||| || |||||||||| ||||||||||| ||||| Sbjct 2116 CGCTATGGACGCTTGGCTGCCACAAGCGAGATATCCCTGTGTTAACTTTTCTGAGACCTC 2175 Query 235 TAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 || ||| ||||| | | |||||| |||||||||||||| |||| | |||||||||| Sbjct 2176 TAACCTAAAATTCTAAAGAACTAAATGATCGATAGGCCACGCTTTAACGGTTTGTATT 2233 >seq109437 Length=17077 Score = 282 bits (312), Expect = 7e-74 Identities = 208/241 (86%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 55 GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 |||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 12657 GTCTCACGGCGGTCTAAATCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACAAT 12716 Query 115 TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAA-AGCAACG 173 | ||| |||| ||||| ||||||||||||||||||||||| | ||||||| ||||||| Sbjct 12717 TGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGACATCGATGAATCAAAAAAGCAACG 12776 Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 |||||||| | |||||||| ||||||||||| |||||||||| ||||||||||| || || Sbjct 12777 TCGCTATGGATGCTTGGCTACCACAAGCCAGATATCCCTGTGTTAACTTTTCTGACATCT 12836 Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| | ||||| | | ||||||||||||||| | ||| |||||| | ||||||||| Sbjct 12837 CTAGCTTAAAATTCTAAAGAACTAAAGGATCGATATGTCACGCTTTCACGATTTGTATTC 12896 Query 294 A 294 | Sbjct 12897 A 12897 >seq111557 Length=4041 Score = 212 bits (234), Expect = 1e-52 Identities = 150/172 (87%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 55 GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 |||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| | Sbjct 2878 GTCTCACGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTGTGTGAACAATCCAACAAT 2937 Query 115 TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGT 174 | || |||| ||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 2938 TTGTGAGTTCTACTTCGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGT 2997 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 || |||| | |||||||| |||||||| || |||||||||| |||| |||| Sbjct 2998 CGATATGGAGGCTTGGCTACCACAAGCGAGATATCCCTGTGTTAACCCTTCT 3049 >seq117479 Length=2055 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 |||||||||||||||||||||||| || ||| |||| ||||| |||||||||||||| Sbjct 986 CTATTAGTGGGTGAACAATCCAACAATTGGCGAGTTCTACTTCGCAATGATAGGAAGAGC 1045 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1046 CGACATCGAAGAATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAG 1102 >seq99279 Length=6011 Score = 102 bits (112), Expect = 1e-19 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 ||||||||||||| || ||| |||| ||||| ||||||||||||||||||||||||| Sbjct 79 TGAACAATCCAACAATTGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGACATCGAAG 20 Query 159 GATCAAAAAGCAACGTCGC 177 |||||||||||||||||| Sbjct 19 AATCAAAAAGCAACGTCGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853387758144