Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq105739 86.0 6e-15 seq89053 78.8 1e-12 >seq105739 Length=13849 Score = 86.0 bits (94), Expect = 6e-15 Identities = 61/70 (87%), Gaps = 4/70 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCA 68 |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||| || Sbjct 4673 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 4732 Query 69 TGGAATAATA 78 |||||||||| Sbjct 4733 TGGAATAATA 4742 >seq89053 Length=5270 Score = 78.8 bits (86), Expect = 1e-12 Identities = 123/169 (73%), Gaps = 9/169 (5%) Strand=Plus/Minus Query 23 AAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCATGGAATAATA 78 ||||| ||||| ||| ||||||||| ||||||| ||||||||| ||||||||||| Sbjct 4994 AAAAAATAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTCGCATGGAATAATT 4935 Query 79 GAATAGGACGTGCG-GTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACG 137 ||| | || | | ||| |||||| ||||| | ||| ||||| || |||| Sbjct 4934 AGATACAGCCTGGGTGGTCTTTTTTGTTGGTTTGC-GCACCAGG-GTAATTATTAATAGT 4877 Query 138 GATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || ||| ||| | ||| |||| | | || ||||||||||||||||| Sbjct 4876 GACAGTTGGGTAT-TCA-TATTTCAGCGGCAGAGGTGAAATTCTTGGAT 4830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511412368960