Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq102494 143 5e-32 seq49339 143 5e-32 seq19580 143 5e-32 seq117265 107 4e-21 seq111800 107 4e-21 seq33935 107 4e-21 seq13547 107 4e-21 seq87400 96.9 7e-18 seq117284 78.8 2e-12 seq106601 75.2 2e-11 seq62786 75.2 2e-11 >seq102494 Length=4849 Score = 143 bits (158), Expect = 5e-32 Identities = 174/236 (74%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 93 TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC 152 |||| || | | ||||| || ||||| | |||||||||||||||||||||||| | Sbjct 238 TCAAACCAAAGCAAGTTAGAAAAAATAAAATGTCTGTGATGCCCTTAGATGTTCTAAGTA 179 Query 153 GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTA 212 ||||| |||||||||||| ||| |||| ||||| || | ||||||| | Sbjct 178 GCACGTGCGCTACACTGATGCGTTCAATGAGTATGCAACCTTTATCGACATGTCTGGG-A 120 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 ||||||| || ||||||| |||||||| |||||||| | | || ||| ||| Sbjct 119 ATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGTTGCAATTTTCAGTTTTGAACAAGG 60 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| || ||||||||| ||||||||| || ||| ||||| ||||| |||||||| Sbjct 59 AATTCCCAGTAAGCGCAAGTCATCAGCTTGCATTGGTTACGCCCCTGTCCTTTGTA 4 >seq49339 Length=2477 Score = 143 bits (158), Expect = 5e-32 Identities = 174/236 (74%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 93 TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC 152 |||| || | | ||||| || ||||| | |||||||||||||||||||||||| | Sbjct 616 TCAAACCAAAGCAAGTTAGAAAAAATAAAATGTCTGTGATGCCCTTAGATGTTCTAAGTA 557 Query 153 GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTA 212 ||||| |||||||||||| ||| |||| ||||| || | ||||||| | Sbjct 556 GCACGTGCGCTACACTGATGCGTTCAATGAGTATGCAACCTTTATCGACATGTCTGGG-A 498 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 ||||||| || ||||||| |||||||| |||||||| | | || ||| ||| Sbjct 497 ATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGTTGCAATTTTCAGTTTTGAACAAGG 438 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| || ||||||||| ||||||||| || ||| ||||| ||||| |||||||| Sbjct 437 AATTCCCAGTAAGCGCAAGTCATCAGCTTGCATTGGTTACGCCCCTGTCCTTTGTA 382 >seq19580 Length=743 Score = 143 bits (158), Expect = 5e-32 Identities = 174/236 (74%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 93 TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC 152 |||| || | | ||||| || ||||| | |||||||||||||||||||||||| | Sbjct 280 TCAAACCAAAGCAAGTTAGAAAAAATAAAATGTCTGTGATGCCCTTAGATGTTCTAAGTA 339 Query 153 GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTA 212 ||||| |||||||||||| ||| |||| ||||| || | ||||||| | Sbjct 340 GCACGTGCGCTACACTGATGCGTTCAATGAGTATGCAACCTTTATCGACATGTCTGGG-A 398 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 ||||||| || ||||||| |||||||| |||||||| | | || ||| ||| Sbjct 399 ATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGTTGCAATTTTCAGTTTTGAACAAGG 458 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| || ||||||||| ||||||||| || ||| ||||| ||||| |||||||| Sbjct 459 AATTCCCAGTAAGCGCAAGTCATCAGCTTGCATTGGTTACGCCCCTGTCCTTTGTA 514 >seq117265 Length=8370 Score = 107 bits (118), Expect = 4e-21 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 202 AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCT 261 |||||||||||||||||| || ||||||| ||||||| |||||||| | | Sbjct 1458 AGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGGCTGTTGCAATTTTCAGT 1517 Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCC 321 ||| ||||| |||| |||||||| ||| ||||||||| || ||||||||||||||||| Sbjct 1518 CTTGAACGAAGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGATTACGTCCCTGCC 1577 Query 322 CT 323 || Sbjct 1578 CT 1579 >seq111800 Length=6919 Score = 107 bits (118), Expect = 4e-21 Identities = 59/59 (100%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 112 AGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4658 AGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 4716 >seq33935 Length=4156 Score = 107 bits (118), Expect = 4e-21 Identities = 59/59 (100%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 112 AGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2830 AGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 2772 >seq13547 Length=4163 Score = 107 bits (118), Expect = 4e-21 Identities = 59/59 (100%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 112 AGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2837 AGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 2779 >seq87400 Length=9637 Score = 96.9 bits (106), Expect = 7e-18 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186 ||||| || |||||||| |||| | ||||| |||||||||||| ||| |||| Sbjct 4406 TGTGACGCGCTTAGATGATCTGAGTAGCACGTGCGCTACACTGATGCGTTCAATGAGTAT 4465 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 | ||||| || ||||||||| ||| |||| || | ||||| || ||||| Sbjct 4466 ACAACCTTTATCGACAGGTCTGGGAAATTTTGTGAATGCACATTGTGCTAGGAATAGACT 4525 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 |||||||| | |||| |||||||||| || ||||||||| |||||||| Sbjct 4526 GTTGCAATTTTCAGTCTTGAACGAGGAATTCCCAGTAAGCGCAACTCATCAGC 4578 >seq117284 Length=11391 Score = 78.8 bits (86), Expect = 2e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 269 GAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| |||||||| ||| ||||||||| || |||||||||||||||||||||||| Sbjct 1819 GAGGAATTCCTAGTAAACGCAAGTCATCAGCNTGCATTGATTACGTCCCTGCCCTTTGTA 1760 >seq106601 Length=5494 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 112 AGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 ||| ||||| |||||||||||||||||||| ||||| |||||||| || ||||||||| Sbjct 1389 AGGAAATAAAAGGTCTGTGATGCCCTTAGACATTCTGAGCCGCACGGGCACTACACTGA 1331 >seq62786 Length=2460 Score = 75.2 bits (82), Expect = 2e-11 Identities = 103/142 (73%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 177 CAACGAGT--TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234 |||||||| ||| |||||| || ||||||| ||||| ||| || | | || Sbjct 1847 CAACGAGTATTCA--ACCTTGATCGATAGGTCTGTGTAATTATGTGAATTCGCATGGAGC 1904 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 | |||||| | ||||| || | | |||| |||||||||| |||||||| ||| || Sbjct 1905 TAGGGATATACTGTTGCATTTTTCGGTCTTGAACGAGGAATTCCTAGTAAACGCAAGTTG 1964 Query 295 TCAGCACGCGTTGATTACGTCC 316 ||||| || |||||||||||| Sbjct 1965 TCAGCTTGCATTGATTACGTCC 1986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946077814272