Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20x_20alni_20[genbank_20GCA_5F000439335.1_202013-07-23] 118,474 sequences; 235,999,877 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq13354 127 7e-27 seq111831 114 4e-23 seq103763 109 2e-21 seq69529 109 2e-21 seq39613 80.6 9e-13 >seq13354 Length=1101 Score = 127 bits (140), Expect = 7e-27 Identities = 78/83 (94%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 497 TTAAGAGAGTCATAGATACTCCCTCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTG 556 Query 495 ACATTCAGAGCACTGGGCAGAAA 517 ||||||||||||||| |||| || Sbjct 557 ACATTCAGAGCACTGAGCAGCAA 579 >seq111831 Length=4115 Score = 114 bits (126), Expect = 4e-23 Identities = 68/71 (96%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 2999 TTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGACAGAAATCACA 2940 Query 523 TTGCGTCAACA 533 ||| ||||||| Sbjct 2939 TTGTGTCAACA 2929 >seq103763 Length=8335 Score = 109 bits (120), Expect = 2e-21 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||| |||||| ||||||||||||||||||| |||||||||||| ||||||||| | Sbjct 3138 TTAAGAGATTCATAGATACTCCCGCCGTTTACCCGTGCTTGGTTGAATCTCTTCACTTGG 3197 Query 495 ACATTCAGAGCACTGGGCAGAAA 517 ||||||| ||| ||| |||| || Sbjct 3198 ACATTCAAAGCGCTGAGCAGCAA 3220 >seq69529 Length=8929 Score = 109 bits (120), Expect = 2e-21 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||| |||||| ||||||||||||||||||| |||||||||||| ||||||||| | Sbjct 5622 TTAAGAGATTCATAGATACTCCCGCCGTTTACCCGTGCTTGGTTGAATCTCTTCACTTGG 5563 Query 495 ACATTCAGAGCACTGGGCAGAAA 517 ||||||| ||| ||| |||| || Sbjct 5562 ACATTCAAAGCGCTGAGCAGCAA 5540 >seq39613 Length=1454 Score = 80.6 bits (88), Expect = 9e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 61 GTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC 119 ||||| ||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 341 GTTATCATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGATGATGTCTTCCAC 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633262713152